Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20997 | Canola | nucleus | 64.19 | 73.97 |
| Bra016834.1-P | Field mustard | nucleus | 63.36 | 73.25 |
| CDY57038 | Canola | cytosol | 62.81 | 71.25 |
| CDY49782 | Canola | nucleus | 66.67 | 68.36 |
| CDX97961 | Canola | cytosol | 61.71 | 68.29 |
| Bra019852.1-P | Field mustard | nucleus | 65.29 | 64.4 |
| KRH10699 | Soybean | nucleus | 26.72 | 32.12 |
| KRH21632 | Soybean | nucleus | 28.65 | 30.06 |
| Solyc02g079780.1.1 | Tomato | nucleus | 25.34 | 28.31 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 25.9 | 27.65 |
| PGSC0003DMT400055884 | Potato | nucleus | 23.97 | 26.85 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837686 | ProteinID:AAF16629.1 | ProteinID:AEE28736.1 | EMBL:AK117824 | ArrayExpress:AT1G11440 |
| EnsemblPlantsGene:AT1G11440 | RefSeq:AT1G11440 | TAIR:AT1G11440 | RefSeq:AT1G11440-TAIR-G | EnsemblPlants:AT1G11440.1 | TAIR:AT1G11440.1 |
| EMBL:BT006248 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004674 | GO:GO:0005488 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016301 |
| GO:GO:0016310 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046777 | GO:GO:0070300 | RefSeq:NP_172611.1 |
| InterPro:PLDrp1-like | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | UniProt:Q9LPZ0 | UniParc:UPI0000048230 | SEG:seg |
Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
Coordinates
chr1:+:3849201..3850735
Molecular Weight (calculated)
41812.3 Da
IEP (calculated)
3.770
GRAVY (calculated)
-1.099
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.