Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH10699 | Soybean | nucleus | 32.06 | 36.09 |
| KRH21632 | Soybean | nucleus | 34.41 | 33.81 |
| CDY57038 | Canola | cytosol | 28.82 | 30.62 |
| Bra016834.1-P | Field mustard | nucleus | 28.24 | 30.57 |
| CDY20997 | Canola | nucleus | 27.94 | 30.16 |
| CDX97961 | Canola | cytosol | 27.94 | 28.96 |
| Bra019852.1-P | Field mustard | nucleus | 30.29 | 27.99 |
| CDY49782 | Canola | nucleus | 27.94 | 26.84 |
| AT1G11440.1 | Thale cress | nucleus | 27.65 | 25.9 |
| PGSC0003DMT400055884 | Potato | nucleus | 23.53 | 24.69 |
| Solyc02g079780.1.1 | Tomato | nucleus | 22.65 | 23.69 |
Protein Annotations
| ArrayExpress:VIT_00s2705g00010 | EMBL:AM458362 | EMBL:FN595145 | EnsemblPlants:VIT_00s2705g00010.t01 | EnsemblPlantsGene:VIT_00s2705g00010 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008289 | GO:GO:0070300 | InterPro:PLDrp1-like | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 |
| ProteinID:CAN76854 | ProteinID:CAN76854.1 | ProteinID:CCB45369 | ProteinID:CCB45369.1 | SEG:seg | TIGR:TC68948 |
| unigene:Vvi.8340 | UniParc:UPI000393B62D | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrUn:+:42750586..42751713
Molecular Weight (calculated)
38166.4 Da
IEP (calculated)
4.075
GRAVY (calculated)
-1.118
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYFGSNYYE AEPGIYLPTP YGGGYDFAPS HHALAPYSCY EFNEPSFFQY GPNPFVDAYD PAPNRSTISY SVSTVSQSEL VVYDPTPYGG GYDPFHTQFT
101: VSYNKSGFNE PDFEEYDPTP YGGGYDIAQT YGKPLPPSDE ICYPRDAPQA IAPSLDPLPS GKKEEDHESA SEPQKGSQPS KASEEEQEQQ SHGGTEDVLN
201: RGYENGHGSN LGEPLGSSQS GEIEGNYYDD YYPWTGYEYD YGNGRSDKHE NEKQVPQDPW GYSPEAMDFC ESIFGHWPCL YKQKRYGHQG TTNEERNSNQ
301: WKGTEDFIFG SSYPYTPSKD EGGSHGDAIY GYERLYQEQP
101: VSYNKSGFNE PDFEEYDPTP YGGGYDIAQT YGKPLPPSDE ICYPRDAPQA IAPSLDPLPS GKKEEDHESA SEPQKGSQPS KASEEEQEQQ SHGGTEDVLN
201: RGYENGHGSN LGEPLGSSQS GEIEGNYYDD YYPWTGYEYD YGNGRSDKHE NEKQVPQDPW GYSPEAMDFC ESIFGHWPCL YKQKRYGHQG TTNEERNSNQ
301: WKGTEDFIFG SSYPYTPSKD EGGSHGDAIY GYERLYQEQP
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.