Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g079780.1.1 | Tomato | nucleus | 86.11 | 85.85 |
| KRH10699 | Soybean | nucleus | 27.47 | 29.47 |
| KRH21632 | Soybean | nucleus | 29.94 | 28.03 |
| Bra016834.1-P | Field mustard | nucleus | 26.85 | 27.71 |
| CDY20997 | Canola | nucleus | 26.23 | 26.98 |
| CDY57038 | Canola | cytosol | 25.93 | 26.25 |
| CDX97961 | Canola | cytosol | 24.69 | 24.39 |
| Bra019852.1-P | Field mustard | nucleus | 27.47 | 24.18 |
| CDY49782 | Canola | nucleus | 26.23 | 24.01 |
| AT1G11440.1 | Thale cress | nucleus | 26.85 | 23.97 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 24.69 | 23.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055884 | EnsemblPlantsGene:PGSC0003DMG400021709 | EntrezGene:107058655 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| GO:GO:0070300 | InterPro:PLDrp1-like | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | PGSC:PGSC0003DMG400021709 | RefSeq:XP_015160114.1 |
| SEG:seg | UniParc:UPI0002964908 | UniProt:M1BYQ2 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021709]
Coordinates
chr2:+:35526137..35527638
Molecular Weight (calculated)
36814.7 Da
IEP (calculated)
4.210
GRAVY (calculated)
-0.960
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFYGYNGDA GEYHWTPNFN VSYDYDAFPI SYSSYEQSTN YNYYYTTQIH PELSYSVHNS VEPKLIQYEI GPNSLETRTI VSCYTKEQDD TQFDEYDPTP
101: YGGGFDMAQI YGKPLPPSNE ICHPPSSPKS NGLPLHGFDY GSNNSPYVSH TNQLEQPQIQ NKENGVKDEQ KSLSGVKEKT SLEKPAQQDE DFVVGNGKTG
201: EKPILEKPVE PLQQDEDFVV GNGSIGEYGY DYGRQLQQIP YGSGLESMDL CESLFGYWPC IAKENKRRNC NCVNVAEDNS SSSNEQWKCT ADYLFGNPYG
301: YGGDGRDWDC VYNNQSYYYH QQQL
101: YGGGFDMAQI YGKPLPPSNE ICHPPSSPKS NGLPLHGFDY GSNNSPYVSH TNQLEQPQIQ NKENGVKDEQ KSLSGVKEKT SLEKPAQQDE DFVVGNGKTG
201: EKPILEKPVE PLQQDEDFVV GNGSIGEYGY DYGRQLQQIP YGSGLESMDL CESLFGYWPC IAKENKRRNC NCVNVAEDNS SSSNEQWKCT ADYLFGNPYG
301: YGGDGRDWDC VYNNQSYYYH QQQL
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.