Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016834.1-P | Field mustard | nucleus | 97.14 | 97.45 |
| CDY57038 | Canola | cytosol | 93.33 | 91.88 |
| CDX97961 | Canola | cytosol | 74.29 | 71.34 |
| CDY49782 | Canola | nucleus | 78.41 | 69.77 |
| AT1G11440.1 | Thale cress | nucleus | 73.97 | 64.19 |
| KRH10699 | Soybean | nucleus | 32.38 | 33.77 |
| KRH21632 | Soybean | nucleus | 32.06 | 29.19 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 30.16 | 27.94 |
| Solyc02g079780.1.1 | Tomato | nucleus | 28.25 | 27.38 |
| PGSC0003DMT400055884 | Potato | nucleus | 26.98 | 26.23 |
Protein Annotations
| EnsemblPlants:CDY20997 | EnsemblPlantsGene:GSBRNA2T00015153001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | GO:GO:0070300 |
| InterPro:PLDrp1-like | ncoils:Coil | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | ProteinID:CDY20997 | ProteinID:CDY20997.1 |
| SEG:seg | UniParc:UPI0004EF26AB | UniProt:A0A078G7J5 | MapMan:35.2 | : | : |
Description
BnaA08g25280DBnaA08g25280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7J5]
Coordinates
chrLK032115:+:274712..275811
Molecular Weight (calculated)
36175.6 Da
IEP (calculated)
4.053
GRAVY (calculated)
-0.986
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFYEHYEF PYDTNQVNHL YDHNYYDNNQ QHQFGFNPMS YNSYDNWNGS EYEYETTTSA SVVYSVSTMS EPKHLFYDPS YYTTTTYESP SQFSIYRNVQ
101: GFNEPEFEEY DPTPYGGGYD IVATYGKPLP PSEKTCYPSS TADQASPPSP PEIIAPVPLG IYDGGEKKAV KKRVTFSEPL EEAKPLETIK EEENDHQEEA
201: EEEEEDHSSS NGTVQPETVD KVEVKALYVP SGYGLEATDL CEVIFGGYFP CVLRNKRRQE DENRAAEVTC WDSADSDPWK TTSDYLFGDS YPYGYEDGVG
301: RRQFEISSYG YYQRY
101: GFNEPEFEEY DPTPYGGGYD IVATYGKPLP PSEKTCYPSS TADQASPPSP PEIIAPVPLG IYDGGEKKAV KKRVTFSEPL EEAKPLETIK EEENDHQEEA
201: EEEEEDHSSS NGTVQPETVD KVEVKALYVP SGYGLEATDL CEVIFGGYFP CVLRNKRRQE DENRAAEVTC WDSADSDPWK TTSDYLFGDS YPYGYEDGVG
301: RRQFEISSYG YYQRY
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.