Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20997 | Canola | nucleus | 91.88 | 93.33 |
| CDX97961 | Canola | cytosol | 73.44 | 71.65 |
| CDY49782 | Canola | nucleus | 77.5 | 70.06 |
| AT1G11440.1 | Thale cress | nucleus | 71.25 | 62.81 |
| KRH10699 | Soybean | nucleus | 29.69 | 31.46 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 30.62 | 28.82 |
| KRH21632 | Soybean | nucleus | 30.94 | 28.61 |
| Solyc02g079780.1.1 | Tomato | nucleus | 27.5 | 27.08 |
| PGSC0003DMT400055884 | Potato | nucleus | 26.25 | 25.93 |
Protein Annotations
| EnsemblPlants:CDY57038 | EnsemblPlantsGene:GSBRNA2T00020443001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | GO:GO:0070300 |
| InterPro:PLDrp1-like | ncoils:Coil | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | ProteinID:CDY57038 | ProteinID:CDY57038.1 |
| SEG:seg | UniParc:UPI0004EADAF9 | UniProt:A0A078J3Z5 | MapMan:35.2 | : | : |
Description
BnaC08g14940DBnaC08g14940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3Z5]
Coordinates
chrLK033542:+:14673..15766
Molecular Weight (calculated)
36738.3 Da
IEP (calculated)
4.024
GRAVY (calculated)
-0.969
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFYEHYEF PYDSIQVNHL YDHNYYDNNQ HQQFGLNPMS YNCYDNWNGP EYDEYETTTS ASVAYSVSTM SEPKHLFYDP SYYTTTTYES PSQFSIYRNV
101: QGFNEPEFEE YDPTPYGGGY DIVATYGKPL PPSEKTCYPS STAGQASPPS PPEIIAPVPL GVYDGGEKKD VKKRVTFSEP LEEAKPLETI KEEENDHQEE
201: EEEEEAEEEK DHSLSNGTVQ PETVDKVEVK ALYVPSGYGL EATDLCEVIF GGYFPCVLRN KRRLEDENRA AEVTCWDSAD SDPWKTTSDY LFGDSYPYGY
301: EDGVGRRQFE ISSYGYYQRY
101: QGFNEPEFEE YDPTPYGGGY DIVATYGKPL PPSEKTCYPS STAGQASPPS PPEIIAPVPL GVYDGGEKKD VKKRVTFSEP LEEAKPLETI KEEENDHQEE
201: EEEEEAEEEK DHSLSNGTVQ PETVDKVEVK ALYVPSGYGL EATDLCEVIF GGYFPCVLRN KRRLEDENRA AEVTCWDSAD SDPWKTTSDY LFGDSYPYGY
301: EDGVGRRQFE ISSYGYYQRY
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.