Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97961 | Canola | cytosol | 82.88 | 92.99 |
| Bra016834.1-P | Field mustard | nucleus | 64.67 | 75.8 |
| AT1G11440.1 | Thale cress | nucleus | 64.4 | 65.29 |
| KRH10699 | Soybean | nucleus | 28.53 | 34.77 |
| KRH21632 | Soybean | nucleus | 29.35 | 31.21 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 27.99 | 30.29 |
| Solyc02g079780.1.1 | Tomato | nucleus | 24.73 | 28.0 |
| PGSC0003DMT400055884 | Potato | nucleus | 24.18 | 27.47 |
Protein Annotations
| EnsemblPlants:Bra019852.1 | EnsemblPlants:Bra019852.1-P | EnsemblPlantsGene:Bra019852 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| GO:GO:0070300 | InterPro:PLDrp1-like | ncoils:Coil | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | SEG:seg |
| UniParc:UPI000253EB7D | UniProt:M4DTK9 | MapMan:35.2 | : | : | : |
Description
AT1G11440 (E=8e-055) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 22740 Blast hits to 8622 proteins in 417 species: Archae - 22; Bacteria - 573; Metazoa - 11353; Fungi - 2147; Plants - 905; Viruses - 631; Other Eukaryotes - 7109 (source: NCBI BLink).
Coordinates
chrA06:+:4007746..4008852
Molecular Weight (calculated)
42344.0 Da
IEP (calculated)
3.845
GRAVY (calculated)
-1.132
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MANYYEHYQI PYDFNQVNNN LYDHNYYDNN QHQQFGFNPT SYSSAYDPMS YNSPYYDNWN GSSEYETTSA SVAYSVYTMS EPKHLFYDPN VYTTYESPPQ
101: FCIYRSVQGF NEPEFEEYDP TPYGGGYDIA ATYGKPLPPS EKICYPPSTS AQGNPPSPPE VIAPVPLGVY DGGEKKVVKK RVTFSEPLEE ARPLETTKED
201: DHQEEEEDGE EWEEDEDEDE DEEEEEEDDS SSYVTTKPES VDTGEVKAVY VHQEEEEKED SSSYGTTTKP DAEDKGEVKA VYVPSGYGLE ATDMCEVIFG
301: GYFPCVLRNK RLQEDQNRAA EVSCWESTDS DPWKTTSDYL FGDSYPYGYE NRLERSQFEI SSYGYQRY
101: FCIYRSVQGF NEPEFEEYDP TPYGGGYDIA ATYGKPLPPS EKICYPPSTS AQGNPPSPPE VIAPVPLGVY DGGEKKVVKK RVTFSEPLEE ARPLETTKED
201: DHQEEEEDGE EWEEDEDEDE DEEEEEEDDS SSYVTTKPES VDTGEVKAVY VHQEEEEKED SSSYGTTTKP DAEDKGEVKA VYVPSGYGLE ATDMCEVIFG
301: GYFPCVLRNK RLQEDQNRAA EVSCWESTDS DPWKTTSDYL FGDSYPYGYE NRLERSQFEI SSYGYQRY
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.