CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75699	Canola	cytosol	92.58	69.17
AT4G40050.1	Thale cress	cytosol	83.41	63.77
VIT_07s0191g00140.t01	Wine grape	cytosol	62.23	47.03
KRH59293	Soybean	cytosol	62.01	47.02
PGSC0003DMT400041659	Potato	cytosol	60.26	46.46
KRH43143	Soybean	cytosol	61.14	46.36
Solyc11g010240.1.1	Tomato	cytosol, nucleus	60.04	46.3
CDX92045	Canola	cytosol, nucleus, peroxisome	45.2	34.21
CDX74216	Canola	cytosol, extracellular, peroxisome	44.54	33.72
VIT_00s2531g00010.t01	Wine grape	cytosol, extracellular	1.53	4.17
CDX69359	Canola	nucleus	0.66	2.54

Protein Annotations

EnsemblPlants:CDX69358	EnsemblPlantsGene:GSBRNA2T00131209001	GO:A0A078C2S0	GO:GO:0003674	GO:GO:0003714	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR016137
InterPro:RGS	InterPro:SCAI	PANTHER:PTHR21243	PANTHER:PTHR21243:SF13	PFAM:PF12070	PFscan:PS50132
ProteinID:CDX69358	ProteinID:CDX69358.1	UniParc:UPI0004EDEFE6	MapMan:35.2	:	:

Description

BnaC01g00950D

Coordinates

chrLK031789:+:4367444..4370897

Molecular Weight (calculated)

52669.1 Da

IEP (calculated)

9.245

GRAVY (calculated)

-0.371

Length

458 amino acids

Sequence
(BLAST)

001: MAEEDVSRNF RALVENADRK FARVRDLPAF GRAQSHYFHK VFKAYMKLWI YQQSHRPKLV ASGLNRWEIG EIASRIGQLY FSQYMRTSEA RFLLESYVFY
101: EAILKRRYFE EERKDLSARS KELRFYARFL LVALIVDRRE MVLHLAEKLR ALVDDSKSNF RETNFKEWRI VVQEITRFTK ADVDLTYVRP LRYCAMLDSY
201: PASQTYLARF HAKKLFKFRD ALLASYHRNE VKYAEVTLDT YRMMQCLEWE PSGSFYQKRP VETKENGFVV DHTLTSGIID MKLAADMADP SLPPNPRKAV
301: LYRPTVSHLL AVLAMICDEL SPECVMLIYL SASGGPAARE NVAQPENAVG SSRTSKSKLL GRASQEQKSY KSEPHSNGHK SSGGYYDDCL WLGPRGGSGS
401: NNLYPGDLIP FTRKPLFLVI DSDTSRAFKA GFEWCRERGA CCSISFSSEA IFGEPIIC

Best Arabidopsis Sequence Match ( AT4G40050.2 )
(BLAST)

001: MAGEDVSSNF RALVENADRK FARVRDLPAF GRAQSHYFQK VFKAYMKLWN YQQSHRSKLV ESGLNRWEIG EIASRIGQLY FSQYMRTSEA RFLLEAFVFY
101: EAILKRSYFD EAQGKDLGAR FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI ESDTNLTYLR PLRYCAMLDS
201: YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA
301: ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG
401: SNNLYPGDLI PFTRKPLFLI IDSDTSRAFK AGFGRRRERR ACCYASFSSE AIIREPIY

Arabidopsis Description

Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:Q94BN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.