Factsheet for AT4G40050.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011810.1-P	Field mustard	cytosol	86.64	86.93
CDX75699	Canola	cytosol	87.31	85.32
CDX69359	Canola	nucleus	16.53	83.9
CDX69358	Canola	cytosol	63.77	83.41
VIT_07s0191g00140.t01	Wine grape	cytosol	63.77	63.04
PGSC0003DMT400041659	Potato	cytosol	61.1	61.62
KRH59293	Soybean	cytosol	61.77	61.26
Solyc11g010240.1.1	Tomato	cytosol, nucleus	60.6	61.11
KRH43143	Soybean	cytosol	60.93	60.43
VIT_00s2531g00010.t01	Wine grape	cytosol, extracellular	16.86	60.12
AT3G03570.1	Thale cress	cytosol, nucleus, peroxisome	44.57	43.99

Protein Annotations

MapMan:35.2	EntrezGene:830168	ProteinID:AEE87162.1	ArrayExpress:AT4G40050	EnsemblPlantsGene:AT4G40050	RefSeq:AT4G40050
TAIR:AT4G40050	RefSeq:AT4G40050-TAIR-G	EnsemblPlants:AT4G40050.1	TAIR:AT4G40050.1	EMBL:AY040014	EMBL:AY133799
Unigene:At.2870	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:1903507	InterPro:IPR016137	RefSeq:NP_568079.1	PFAM:PF12070	PIRSF:PIRSF013022
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PFscan:PS50132	PANTHER:PTHR21243	PANTHER:PTHR21243:SF13	UniProt:Q94BN1	InterPro:RGS	InterPro:SCAI
InterPro:SCAI_metazoan/Viridiplantae	UniParc:UPI00000A5608	SEG:seg	:	:	:

Description

Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:Q94BN1]

Coordinates

chr4:-:18560860..18563987

Molecular Weight (calculated)

68275.7 Da

IEP (calculated)

8.249

GRAVY (calculated)

-0.276

Length

599 amino acids

Sequence
(BLAST)

001: MAGEDVSSNF RALVENADRK FARVRDLPAF GRAQSHYFQK VFKAYMKLWN YQQSHRSKLV ESGLNRWEIG EIASRIGQLY FSQYMRTSEA RFLLEAFVFY
101: EAILKRSYFD EAQGKDLGAR FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI ESDTNLTYLR PLRYCAMLDS
201: YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA
301: ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG
401: SNNLYPGDLI PFTRKPLFLI IDSDTSRAFK VLGGAERGEP VAMLLSPLKP SFENPSTDDT EALNGSQFTF FLTAPLQAFC QMLGLSNTKP DPELCDEAES
501: ILSASFSEWE TILLTSKVLN LVWAQVLPDP FLRRLILRFI FCRSVLTSFS RTEDDDPYLP QCHPNLPELL SSVSKPVQSS VQRLAEHLGV AKSFHFTNT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.