Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s2531g00010.t01 | Wine grape | cytosol, extracellular | 56.78 | 39.88 |
| Bra011810.1-P | Field mustard | cytosol | 99.15 | 19.6 |
| CDX75699 | Canola | cytosol | 97.46 | 18.76 |
| AT4G40050.1 | Thale cress | cytosol | 83.9 | 16.53 |
| VIT_07s0191g00140.t01 | Wine grape | cytosol | 55.93 | 10.89 |
| Solyc11g010240.1.1 | Tomato | cytosol, nucleus | 52.54 | 10.44 |
| PGSC0003DMT400041659 | Potato | cytosol | 50.85 | 10.1 |
| KRH43143 | Soybean | cytosol | 51.69 | 10.1 |
| KRH59293 | Soybean | cytosol | 51.69 | 10.1 |
| CDX74216 | Canola | cytosol, extracellular, peroxisome | 40.68 | 7.93 |
| CDX92045 | Canola | cytosol, nucleus, peroxisome | 39.83 | 7.77 |
| CDX69358 | Canola | cytosol | 2.54 | 0.66 |
Protein Annotations
| EnsemblPlants:CDX69359 | EnsemblPlantsGene:GSBRNA2T00131210001 | GO:A0A078BZH3 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:SCAI |
| PANTHER:PTHR21243 | PANTHER:PTHR21243:SF13 | PFAM:PF12070 | ProteinID:CDX69359 | ProteinID:CDX69359.1 | SEG:seg |
| UniParc:UPI0004EF03A5 | MapMan:35.2 | : | : | : | : |
Description
BnaC01g00940D
Coordinates
chrLK031789:+:4370971..4371814
Molecular Weight (calculated)
13341.9 Da
IEP (calculated)
4.651
GRAVY (calculated)
-0.069
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGLSNSDPE PEVYDEAESI LSASFSEWET ILLTSKVLNL VWAQVLPDQF LRRLILRFIF CRSVLTCLSR TEDDDPYLPQ CHPSLPDSLS PVSKTVQSTV
101: ERLADHLGVS KSFHFSKT
101: ERLADHLGVS KSFHFSKT
001: MAGEDVSSNF RALVENADRK FARVRDLPAF GRAQSHYFQK VFKAYMKLWN YQQSHRSKLV ESGLNRWEIG EIASRIGQLY FSQYMRTSEA RFLLEAFVFY
101: EAILKRSYFD EAQGKDLGAR FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI ESDTNLTYLR PLRYCAMLDS
201: YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA
301: ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG
401: SNNLYPGDLI PFTRKPLFLI IDSDTSRAFK VLGGAERGEP VAMLLSPLKP SFENPSTDDT EALNGSQFTF FLTAPLQAFC QMLGLSNTKP DPELCDEAES
501: ILSASFSEWE TILLTSKVLN LVWAQVLPDP FLRRLILRFI FCRSVLTSFS RTEDDDPYLP QCHPNLPELL SSVSKPVQSS VQRLAEHLGV AKSFHFTNT
101: EAILKRSYFD EAQGKDLGAR FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI ESDTNLTYLR PLRYCAMLDS
201: YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA
301: ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG
401: SNNLYPGDLI PFTRKPLFLI IDSDTSRAFK VLGGAERGEP VAMLLSPLKP SFENPSTDDT EALNGSQFTF FLTAPLQAFC QMLGLSNTKP DPELCDEAES
501: ILSASFSEWE TILLTSKVLN LVWAQVLPDP FLRRLILRFI FCRSVLTSFS RTEDDDPYLP QCHPNLPELL SSVSKPVQSS VQRLAEHLGV AKSFHFTNT
Arabidopsis Description
Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:Q94BN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.