Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041659 | Potato | cytosol | 96.8 | 96.8 |
| VIT_07s0191g00140.t01 | Wine grape | cytosol | 69.02 | 67.66 |
| VIT_00s2531g00010.t01 | Wine grape | cytosol, extracellular | 18.52 | 65.48 |
| KRH59293 | Soybean | cytosol | 61.78 | 60.76 |
| AT4G40050.1 | Thale cress | cytosol | 61.11 | 60.6 |
| KRH43143 | Soybean | cytosol | 61.62 | 60.6 |
| Bra011810.1-P | Field mustard | cytosol | 60.61 | 60.3 |
| CDX69358 | Canola | cytosol | 46.3 | 60.04 |
| CDX75699 | Canola | cytosol | 61.11 | 59.22 |
| CDX69359 | Canola | nucleus | 10.44 | 52.54 |
| Solyc01g081030.2.1 | Tomato | nucleus | 48.15 | 46.28 |
Protein Annotations
| EnsemblPlants:Solyc11g010240.1.1 | EnsemblPlantsGene:Solyc11g010240.1 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903507 | InterPro:SCAI | PANTHER:PTHR21243 | PANTHER:PTHR21243:SF13 |
| PFAM:PF12070 | SEG:seg | UniParc:UPI00027694E6 | UniProt:K4D5I5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr11:-:3293989..3299838
Molecular Weight (calculated)
67615.1 Da
IEP (calculated)
8.552
GRAVY (calculated)
-0.231
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDVVPKTF RALVESAEKK YARVRDLPAY GRWGTSNHYF HKVFKAYMRL WKYQQENRMR LLECGLQRWE IGEIASRIGQ LYFSQYMRTS EARFLLESCI
101: FYEAILNRKY FEGSGKDRMV RFKELRFYAR FLMVSLILNR TEMVNLLVEQ FKAIVDDSKT AFPGTNFKEW RLVVQEIVRF ARVHSPSPDA RPLRYCALFD
201: SHPSSRPYVA RFHAKKVLKF RDALLTSYHK NEAKFAELTL DTYRMLQCLE WEPSGSFYQR SPVEPRANGA VTDQSITSGL IDINLAAEMM DPALPPNPKK
301: AVLYRPNVPL LISVVATMCE ELPPESVVLI YISASGNTIQ NTTSHTESSS SSRKSSKNSV FSRTSHEQKS ALHENYTNTN GDTGQYFESC LCLGPSRSGG
401: SNNLYPGDLI PFTRRPLFLI IDSDNSDAFK VLHGAERGEK SALFLSPLRP SFKNPGTEVT QTGSQFTLFL AAPLQAFRQL VGLVSSDEDM DCSDAADGII
501: STAFAEWEVI LCTSTNLDLV WAQVLSDPFL RRLILRFIFC RAVLGLFCLH ERGNEYLPVC LPKLPDTFSP DSETVQPAIR RLARLLKVGD CFRF
101: FYEAILNRKY FEGSGKDRMV RFKELRFYAR FLMVSLILNR TEMVNLLVEQ FKAIVDDSKT AFPGTNFKEW RLVVQEIVRF ARVHSPSPDA RPLRYCALFD
201: SHPSSRPYVA RFHAKKVLKF RDALLTSYHK NEAKFAELTL DTYRMLQCLE WEPSGSFYQR SPVEPRANGA VTDQSITSGL IDINLAAEMM DPALPPNPKK
301: AVLYRPNVPL LISVVATMCE ELPPESVVLI YISASGNTIQ NTTSHTESSS SSRKSSKNSV FSRTSHEQKS ALHENYTNTN GDTGQYFESC LCLGPSRSGG
401: SNNLYPGDLI PFTRRPLFLI IDSDNSDAFK VLHGAERGEK SALFLSPLRP SFKNPGTEVT QTGSQFTLFL AAPLQAFRQL VGLVSSDEDM DCSDAADGII
501: STAFAEWEVI LCTSTNLDLV WAQVLSDPFL RRLILRFIFC RAVLGLFCLH ERGNEYLPVC LPKLPDTFSP DSETVQPAIR RLARLLKVGD CFRF
001: MAGEDVSSNF RALVENADRK FARVRDLPAF GRAQSHYFQK VFKAYMKLWN YQQSHRSKLV ESGLNRWEIG EIASRIGQLY FSQYMRTSEA RFLLEAFVFY
101: EAILKRSYFD EAQGKDLGAR FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI ESDTNLTYLR PLRYCAMLDS
201: YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA
301: ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG
401: SNNLYPGDLI PFTRKPLFLI IDSDTSRAFK VLGGAERGEP VAMLLSPLKP SFENPSTDDT EALNGSQFTF FLTAPLQAFC QMLGLSNTKP DPELCDEAES
501: ILSASFSEWE TILLTSKVLN LVWAQVLPDP FLRRLILRFI FCRSVLTSFS RTEDDDPYLP QCHPNLPELL SSVSKPVQSS VQRLAEHLGV AKSFHFTNT
101: EAILKRSYFD EAQGKDLGAR FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI ESDTNLTYLR PLRYCAMLDS
201: YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA
301: ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG
401: SNNLYPGDLI PFTRKPLFLI IDSDTSRAFK VLGGAERGEP VAMLLSPLKP SFENPSTDDT EALNGSQFTF FLTAPLQAFC QMLGLSNTKP DPELCDEAES
501: ILSASFSEWE TILLTSKVLN LVWAQVLPDP FLRRLILRFI FCRSVLTSFS RTEDDDPYLP QCHPNLPELL SSVSKPVQSS VQRLAEHLGV AKSFHFTNT
Arabidopsis Description
Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:Q94BN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.