Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66307 | Soybean | cytosol | 62.46 | 66.1 |
| KRH48973 | Soybean | cytosol | 61.97 | 65.92 |
| VIT_15s0045g01090.t01 | Wine grape | cytosol | 62.95 | 61.94 |
| AT3G03570.1 | Thale cress | cytosol, nucleus, peroxisome | 59.22 | 60.3 |
| Bra001083.1-P | Field mustard | cytosol, extracellular, peroxisome | 58.58 | 59.83 |
| CDX92045 | Canola | cytosol, nucleus, peroxisome | 58.58 | 59.83 |
| CDX74216 | Canola | cytosol, extracellular, peroxisome | 58.58 | 59.83 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.05 | 51.7 |
| Solyc11g010240.1.1 | Tomato | cytosol, nucleus | 46.28 | 48.15 |
| Os09t0573200-01 | Rice | cytosol, nucleus, plastid | 46.76 | 46.92 |
| TraesCS5B01G209900.1 | Wheat | cytosol | 45.79 | 44.71 |
| TraesCS5A01G213800.2 | Wheat | cytosol | 45.63 | 44.62 |
| EER99292 | Sorghum | cytosol | 44.98 | 44.27 |
| HORVU5Hr1G062040.1 | Barley | cytosol, peroxisome | 45.15 | 44.01 |
| TraesCS5D01G218200.1 | Wheat | cytosol | 45.79 | 43.34 |
| HORVU6Hr1G032750.1 | Barley | cytosol, nucleus | 24.11 | 43.19 |
| Zm00001d021467_P001 | Maize | cytosol | 45.63 | 42.41 |
Protein Annotations
| EnsemblPlants:Solyc01g081030.2.1 | EnsemblPlantsGene:Solyc01g081030.2 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903507 | InterPro:SCAI | PANTHER:PTHR21243 | PANTHER:PTHR21243:SF13 |
| PFAM:PF12070 | SEG:seg | UniParc:UPI000276296B | UniProt:K4AXZ5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1:-:80328080..80338891
Molecular Weight (calculated)
69936.7 Da
IEP (calculated)
7.254
GRAVY (calculated)
-0.196
Length
618 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQQNSNNSS NNIPVSEVYW TLVAKADKKF SKIRDLPYYQ RNRYDTYFYK VFKVYTQLWK FQQENRQKLV EAGLKRWEIG DIASRIGQLY FGQYMRTSEA
101: SYLSESYIFY EAVLTREYFK DGMFQDVNLS NKQLRFLARF MTVCLVLNRH DMVFQLVNQL KMLLDECKRA FQETDFKEWK LVVQEIVKFR KAYPAFMNIR
201: PLRYSVVLDL HPDCLPQVVE AKRKLRLRDA LLCSYHPNEV KYSELTLDTF RMLQCLEWEP SGSFYQTGRV PPSGVGTGIG QNGAPGPSRV NYSQDISDPT
301: LPPNPRKSIL YRPSVTNYLA VLATNCEELP HDGVLLLYLS AAGSSQNSFS SPSHGAGRSF MSRVGDSEAS STSSLNVEFE IANPISAKGN CLSEQSSCLY
401: IGSRSSRGLN GIYPCDLLPF TRRPLFLVID SDISKSFTAL SGSEKGESVI MLLSPAMSLP IPTVDSSRQL SGSSFTSFLT VPLQAFVLML GFTGSDIDMD
501: MYDKADKLLS SSLNEWGLLL AASDNLDPVW AQTLGDPFLR RLILRFIFCR TVLALYAPTF NKTEFLPECI PSLPDAFLPT SDTCQRIVLQ LADIFGATSK
601: FNFSEETPML SDSRCQEN
101: SYLSESYIFY EAVLTREYFK DGMFQDVNLS NKQLRFLARF MTVCLVLNRH DMVFQLVNQL KMLLDECKRA FQETDFKEWK LVVQEIVKFR KAYPAFMNIR
201: PLRYSVVLDL HPDCLPQVVE AKRKLRLRDA LLCSYHPNEV KYSELTLDTF RMLQCLEWEP SGSFYQTGRV PPSGVGTGIG QNGAPGPSRV NYSQDISDPT
301: LPPNPRKSIL YRPSVTNYLA VLATNCEELP HDGVLLLYLS AAGSSQNSFS SPSHGAGRSF MSRVGDSEAS STSSLNVEFE IANPISAKGN CLSEQSSCLY
401: IGSRSSRGLN GIYPCDLLPF TRRPLFLVID SDISKSFTAL SGSEKGESVI MLLSPAMSLP IPTVDSSRQL SGSSFTSFLT VPLQAFVLML GFTGSDIDMD
501: MYDKADKLLS SSLNEWGLLL AASDNLDPVW AQTLGDPFLR RLILRFIFCR TVLALYAPTF NKTEFLPECI PSLPDAFLPT SDTCQRIVLQ LADIFGATSK
601: FNFSEETPML SDSRCQEN
001: MSQQISGNNN IPLSEVYWSL VNKADKKFSK IRDLPFYERS RYENYFFKVF KVYTQLWKFQ QENRQKLVEA GLKRWEIGEI ASRIAQLYYG HYMRTSDAGY
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
Arabidopsis Description
Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:F4J153]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.