Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001083.1-P | Field mustard | cytosol, extracellular, peroxisome | 86.49 | 86.78 |
| CDX92045 | Canola | cytosol, nucleus, peroxisome | 86.49 | 86.78 |
| CDX74216 | Canola | cytosol, extracellular, peroxisome | 86.33 | 86.61 |
| KRH66307 | Soybean | cytosol | 61.12 | 63.53 |
| KRH48973 | Soybean | cytosol | 60.79 | 63.51 |
| Solyc01g081030.2.1 | Tomato | nucleus | 60.3 | 59.22 |
| VIT_15s0045g01090.t01 | Wine grape | cytosol | 60.63 | 58.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.86 | 51.55 |
| HORVU6Hr1G032750.1 | Barley | cytosol, nucleus | 26.19 | 46.09 |
| Os09t0573200-01 | Rice | cytosol, nucleus, plastid | 45.63 | 44.97 |
| HORVU5Hr1G062040.1 | Barley | cytosol, peroxisome | 46.79 | 44.8 |
| AT4G40050.1 | Thale cress | cytosol | 43.99 | 44.57 |
| TraesCS5A01G213800.2 | Wheat | cytosol | 46.13 | 44.3 |
| TraesCS5B01G209900.1 | Wheat | cytosol | 45.96 | 44.08 |
| EER99292 | Sorghum | cytosol | 45.14 | 43.63 |
| TraesCS5D01G218200.1 | Wheat | cytosol | 45.63 | 42.42 |
| Zm00001d021467_P001 | Maize | cytosol | 44.98 | 41.05 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821234 | UniProt:A0A178VMH0 | ProteinID:AEE73958.1 | ArrayExpress:AT3G03570 | EnsemblPlantsGene:AT3G03570 |
| RefSeq:AT3G03570 | TAIR:AT3G03570 | RefSeq:AT3G03570-TAIR-G | EnsemblPlants:AT3G03570.1 | TAIR:AT3G03570.1 | Unigene:At.27937 |
| UniProt:F4J153 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903507 | RefSeq:NP_566209.1 | ProteinID:OAP06435.1 |
| PFAM:PF12070 | PIRSF:PIRSF013022 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21243 | PANTHER:PTHR21243:SF13 | InterPro:SCAI |
| InterPro:SCAI_metazoan/Viridiplantae | UniParc:UPI0000163344 | SEG:seg | : | : | : |
Description
Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:F4J153]
Coordinates
chr3:+:856876..860469
Molecular Weight (calculated)
68638.4 Da
IEP (calculated)
7.646
GRAVY (calculated)
-0.143
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQQISGNNN IPLSEVYWSL VNKADKKFSK IRDLPFYERS RYENYFFKVF KVYTQLWKFQ QENRQKLVEA GLKRWEIGEI ASRIAQLYYG HYMRTSDAGY
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.