Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G209900.1 | Wheat | cytosol | 93.67 | 93.52 |
| HORVU5Hr1G062040.1 | Barley | cytosol, peroxisome | 89.87 | 89.59 |
| TraesCS5D01G218200.1 | Wheat | cytosol | 91.3 | 88.36 |
| HORVU6Hr1G032750.1 | Barley | cytosol, nucleus | 47.63 | 87.25 |
| Os09t0573200-01 | Rice | cytosol, nucleus, plastid | 76.9 | 78.9 |
| EER99292 | Sorghum | cytosol | 75.32 | 75.8 |
| Zm00001d021467_P001 | Maize | cytosol | 74.37 | 70.68 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.85 | 51.7 |
| KRH66307 | Soybean | cytosol | 44.62 | 48.29 |
| KRH48973 | Soybean | cytosol | 44.3 | 48.19 |
| CDX74216 | Canola | cytosol, extracellular, peroxisome | 45.25 | 47.27 |
| Bra001083.1-P | Field mustard | cytosol, extracellular, peroxisome | 45.25 | 47.27 |
| CDX92045 | Canola | cytosol, nucleus, peroxisome | 45.09 | 47.11 |
| AT3G03570.1 | Thale cress | cytosol, nucleus, peroxisome | 44.3 | 46.13 |
| Solyc01g081030.2.1 | Tomato | nucleus | 44.62 | 45.63 |
| VIT_15s0045g01090.t01 | Wine grape | cytosol | 44.15 | 44.43 |
| TraesCS5A01G249100.1 | Wheat | cytosol | 40.19 | 42.83 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G213800.2 | EnsemblPlantsGene:TraesCS5A01G213800 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:SCAI | InterPro:SCAI_metazoan/Viridiplantae | PANTHER:PTHR21243 |
| PANTHER:PTHR21243:SF13 | PFAM:PF12070 | PIRSF:PIRSF013022 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5A:-:429511715..429515922
Molecular Weight (calculated)
70147.7 Da
IEP (calculated)
6.636
GRAVY (calculated)
-0.211
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPVSSTTVQ GNSGGGERNA SGGATMASSP QQGQGQAQGG GGGGVCPAEQ FWSLLDKADR RFARVRDLPL FGRQEPAEYG KAFRIYTQLW RMQQEHRHRL
101: LDAGLRRWQV GEIAARIAHL YYSQYQRASD TALLSEAFVF YHAVLDRAYF LDDHLGASTK HLRFLARFLL VALILSRRAQ TVPRLAGQIR SLLDESKKTL
201: QEADYREWKH VVQEITRFLK ADSPFMNKRP LRYSYAFDPP PETLPTIPPT VKKRGLLLSD AILCSYYHNE VKFTDLTLDT FRMLQCLEWE PCGSFAQNNG
301: YSAHDESGQN HPNLLKDLRD AALPPNPLKT VLYRPSVPHF LKVLATKCEE LPLNTMMLIY LSAAGEVGSS GLGPDTSERV VNSFSQFDIS NTRAVTSKED
401: KEPCLWLGCR EGEGSNCIYP CDMIPFTRRP LFLVIDSNIS YAFKSIHGAE KGETAAMLLS PSSRSCAVGF SGDSTRQSGS QFTMFLTAPV QAFCFLIGNN
501: GLDIIDKDYN KAEELLSLSL NEWAMTLVAS SSLDPVWVEV LGDPLLRRLL LRFIFCRATL SLFKASNDKA ECLPSCVPPL PESVGGESML SQCCVMRVAS
601: FLGAADQFSF AEVTTWPDID EPTSSGGVDK EL
101: LDAGLRRWQV GEIAARIAHL YYSQYQRASD TALLSEAFVF YHAVLDRAYF LDDHLGASTK HLRFLARFLL VALILSRRAQ TVPRLAGQIR SLLDESKKTL
201: QEADYREWKH VVQEITRFLK ADSPFMNKRP LRYSYAFDPP PETLPTIPPT VKKRGLLLSD AILCSYYHNE VKFTDLTLDT FRMLQCLEWE PCGSFAQNNG
301: YSAHDESGQN HPNLLKDLRD AALPPNPLKT VLYRPSVPHF LKVLATKCEE LPLNTMMLIY LSAAGEVGSS GLGPDTSERV VNSFSQFDIS NTRAVTSKED
401: KEPCLWLGCR EGEGSNCIYP CDMIPFTRRP LFLVIDSNIS YAFKSIHGAE KGETAAMLLS PSSRSCAVGF SGDSTRQSGS QFTMFLTAPV QAFCFLIGNN
501: GLDIIDKDYN KAEELLSLSL NEWAMTLVAS SSLDPVWVEV LGDPLLRRLL LRFIFCRATL SLFKASNDKA ECLPSCVPPL PESVGGESML SQCCVMRVAS
601: FLGAADQFSF AEVTTWPDID EPTSSGGVDK EL
001: MSQQISGNNN IPLSEVYWSL VNKADKKFSK IRDLPFYERS RYENYFFKVF KVYTQLWKFQ QENRQKLVEA GLKRWEIGEI ASRIAQLYYG HYMRTSDAGY
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
Arabidopsis Description
Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:F4J153]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.