Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G213800.2 | Wheat | cytosol | 93.52 | 93.67 |
| HORVU5Hr1G062040.1 | Barley | cytosol, peroxisome | 89.26 | 89.12 |
| TraesCS5D01G218200.1 | Wheat | cytosol | 91.47 | 88.67 |
| HORVU6Hr1G032750.1 | Barley | cytosol, nucleus | 47.24 | 86.67 |
| Os09t0573200-01 | Rice | cytosol, nucleus, plastid | 76.3 | 78.41 |
| EER99292 | Sorghum | cytosol | 75.04 | 75.64 |
| Zm00001d021467_P001 | Maize | cytosol | 73.93 | 70.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.45 | 51.39 |
| KRH66307 | Soybean | cytosol | 44.55 | 48.29 |
| KRH48973 | Soybean | cytosol | 44.23 | 48.19 |
| CDX74216 | Canola | cytosol, extracellular, peroxisome | 44.87 | 46.94 |
| Bra001083.1-P | Field mustard | cytosol, extracellular, peroxisome | 44.87 | 46.94 |
| CDX92045 | Canola | cytosol, nucleus, peroxisome | 44.71 | 46.78 |
| AT3G03570.1 | Thale cress | cytosol, nucleus, peroxisome | 44.08 | 45.96 |
| Solyc01g081030.2.1 | Tomato | nucleus | 44.71 | 45.79 |
| VIT_15s0045g01090.t01 | Wine grape | cytosol | 44.71 | 45.06 |
| TraesCS5B01G246800.3 | Wheat | cytosol | 40.13 | 42.91 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G209900.1 | EnsemblPlantsGene:TraesCS5B01G209900 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:SCAI | InterPro:SCAI_metazoan/Viridiplantae | PANTHER:PTHR21243 |
| PANTHER:PTHR21243:SF13 | PFAM:PF12070 | PIRSF:PIRSF013022 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5B:+:379812840..379816881
Molecular Weight (calculated)
70228.9 Da
IEP (calculated)
6.769
GRAVY (calculated)
-0.197
Length
633 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPVSSTTVQ GNSGGGERNA SGGATMASSP QQGQGQVQGS GGGGGVCPAE QFWSLLDKAD RRFARVRDLP LFGRQEPAEY GKAFRIYTQL WRMQQEHRHR
101: LLDAGLRRWQ VGEIAARIAH LYYSQYQRTS DTALLSEAFV FYHAVLDRAY FLDDHLGAST KHLRFLARFL LVALILSRRA QTVPRLAGQI RSLLDESKKT
201: LQEADYREWK HVVQEITRFL KADSPFMNKR PLRYSYAFDP PPEILPTIPP TVKKRGLLLS DAILCSYYHN EVKFTDLTLD TFRMLQCLEW EPCGSFAQNN
301: GYSAHDESGQ NHPNLLKDLR DAALPPNPLK TVLYRPSVPH FLKVLATKCV ELPLNTMMLI YLSAAGEVGS SGLGPDTSER VVNSFSQFDI SNTRAITSKE
401: DKEPCLWLGC REGEGSNCIY PCDLIPFTRR PLFLVIDSNI SYAFKSIHGA EKGETAAMLL SPSSRSCAVG FSGDSTRQSG SQFTMFLTAP LQAFCFLIGN
501: NGLDIIDKDY NKAEELLSLS LNEWAMTLVA SSSLDPAWVE VLGDPLLRRL LLRFIFCRAT LSLFKASNDK AECLPSCVPP LPESVGGESM LSQCCVMRVA
601: SFLGAADQFS FAEVTTWPDI DEPTSSGGAD KEL
101: LLDAGLRRWQ VGEIAARIAH LYYSQYQRTS DTALLSEAFV FYHAVLDRAY FLDDHLGAST KHLRFLARFL LVALILSRRA QTVPRLAGQI RSLLDESKKT
201: LQEADYREWK HVVQEITRFL KADSPFMNKR PLRYSYAFDP PPEILPTIPP TVKKRGLLLS DAILCSYYHN EVKFTDLTLD TFRMLQCLEW EPCGSFAQNN
301: GYSAHDESGQ NHPNLLKDLR DAALPPNPLK TVLYRPSVPH FLKVLATKCV ELPLNTMMLI YLSAAGEVGS SGLGPDTSER VVNSFSQFDI SNTRAITSKE
401: DKEPCLWLGC REGEGSNCIY PCDLIPFTRR PLFLVIDSNI SYAFKSIHGA EKGETAAMLL SPSSRSCAVG FSGDSTRQSG SQFTMFLTAP LQAFCFLIGN
501: NGLDIIDKDY NKAEELLSLS LNEWAMTLVA SSSLDPAWVE VLGDPLLRRL LLRFIFCRAT LSLFKASNDK AECLPSCVPP LPESVGGESM LSQCCVMRVA
601: SFLGAADQFS FAEVTTWPDI DEPTSSGGAD KEL
001: MSQQISGNNN IPLSEVYWSL VNKADKKFSK IRDLPFYERS RYENYFFKVF KVYTQLWKFQ QENRQKLVEA GLKRWEIGEI ASRIAQLYYG HYMRTSDAGY
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
101: LSESYVFYEA ILTREYFKDG LFQDLNIANK QLRFLARFLM VCLVLGRREM VHQLVDQFKR LIDECKRTFQ ETDFKEWKVV AQEIVRFLKS DTAFMNIRPL
201: RYSLVLDPNL DAGTPRASRS LRLTDAILSS YYCNEVKYSE LTLDSFRMLQ CLEWEPSGSL YQSTGAKMGQ NAPVGVARIN SQSMNDPTLP PNPRKAVLYR
301: PSITHFLAVL ATICEELPSH GILLLYLSAS GKIGQISSSP LSARSATSVE ENILRDFESH TIKQETEPSL QITPSGQSLR QISEDAVSTP CGLSFGSHGL
401: TGSSYIYPSD LVPFTRKPLF IIIDSDSSTV FKNICGAEKG EPAALLLSPS HTPPLISADF SRQPSGSLFT IFLTSPVQAF CLLSEISASD METDIFTKAE
501: KLLSSSMNEW ASTLATSDTL HPVWSQILKD PFLRRLLLRF IFCRAVLALY TPVFNNKQNQ PECCPSLPES LLPTAPAVQS AVFQMANVFG ATSKFTIPQD
601: ITMLESF
Arabidopsis Description
Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:F4J153]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.