Factsheet for VIT_00s2531g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69359	Canola	nucleus	39.88	56.78
VIT_07s0191g00140.t01	Wine grape	cytosol	99.4	27.56
KRH59293	Soybean	cytosol	67.26	18.71
Solyc11g010240.1.1	Tomato	cytosol, nucleus	65.48	18.52
KRH43143	Soybean	cytosol	64.88	18.05
PGSC0003DMT400041659	Potato	cytosol	63.1	17.85
Bra011810.1-P	Field mustard	cytosol	60.12	16.92
AT4G40050.1	Thale cress	cytosol	60.12	16.86
CDX75699	Canola	cytosol	61.31	16.8
VIT_15s0045g01090.t01	Wine grape	cytosol	38.1	10.19
CDX69358	Canola	cytosol	4.17	1.53

Protein Annotations

MapMan:35.2	ProteinID:CCB57474	ProteinID:CCB57474.1	UniProt:F6HS15	EMBL:FN596170	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903507
PFAM:PF12070	PANTHER:PTHR21243	PANTHER:PTHR21243:SF13	InterPro:SCAI	UniParc:UPI00015CD5E2	ArrayExpress:VIT_00s2531g00010
EnsemblPlantsGene:VIT_00s2531g00010	EnsemblPlants:VIT_00s2531g00010.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:42271127..42272698

Molecular Weight (calculated)

18404.8 Da

IEP (calculated)

4.054

GRAVY (calculated)

0.249

Length

168 amino acids

Sequence
(BLAST)

001: DLHGAERGET AALLLSPLKP AFKGPFGFDT TQNGSQFTFF LTAPLQAFYE LVGLSFSDTD SDAYNDADKI LSTALSEWEV ILCTSTSLDL VWAQVLSDPF
101: LRRLILRFIF CRCVLSLFCP PEDSEQYLPL CLPQLPSSVS PNSDAVQSAV LQLANHLGVA ECFSFNGL

Best Arabidopsis Sequence Match ( AT4G40050.1 )
(BLAST)

001: MAGEDVSSNF RALVENADRK FARVRDLPAF GRAQSHYFQK VFKAYMKLWN YQQSHRSKLV ESGLNRWEIG EIASRIGQLY FSQYMRTSEA RFLLEAFVFY
101: EAILKRSYFD EAQGKDLGAR FKELRFYARF LLVSLIVDRK QMLLHLADKL RLLVDHSISN FRETNFKEWR LVVQEITRFI ESDTNLTYLR PLRYCAMLDS
201: YPASQTYLAR FHAKKLFKFR DALLASYHRN EVKYAEVTLD TYRMMQCLEW EPSGSFYQKK PVEAKENGFV VDHTLTSGLI DMNLAADMAD PSLPPNPRKA
301: ILYRPTVSHL LAVLAMICDE LSPETVMLLY LSASGGPARE NVAQPENSVG SSRTSKSKLL ARASQEQKSY KSEPHSNGKL MSAEYYENHL WLGPRGGSSG
401: SNNLYPGDLI PFTRKPLFLI IDSDTSRAFK VLGGAERGEP VAMLLSPLKP SFENPSTDDT EALNGSQFTF FLTAPLQAFC QMLGLSNTKP DPELCDEAES
501: ILSASFSEWE TILLTSKVLN LVWAQVLPDP FLRRLILRFI FCRSVLTSFS RTEDDDPYLP QCHPNLPELL SSVSKPVQSS VQRLAEHLGV AKSFHFTNT

Arabidopsis Description

Signal transducer, putative (DUF3550/UPF0682) [Source:UniProtKB/TrEMBL;Acc:Q94BN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.