CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006855	Potato	cytosol, mitochondrion, nucleus	40.0	42.55
CDY72626	Canola	cytosol, extracellular, plastid	62.67	35.21
CDY70774	Canola	cytosol, extracellular, plastid	62.0	34.96
GSMUA_Achr6P13250_001	Banana	cytosol	58.67	25.66
CDX73607	Canola	plastid	68.67	22.2
CDX78122	Canola	plastid	68.0	21.98
AT3G52750.2	Thale cress	plastid	67.33	21.35
KRH67910	Soybean	plastid	66.0	20.84
KRG96197	Soybean	plastid	66.0	20.71
Solyc09g009430.2.1	Tomato	plastid	64.67	20.29
VIT_08s0007g03390.t01	Wine grape	plastid	64.67	19.96
KRH32740	Soybean	plastid	64.0	19.83
CDY43739	Canola	plastid	62.67	19.71
Solyc10g083490.1.1	Tomato	plastid	62.67	19.58
KRH20058	Soybean	plastid	62.0	19.14
TraesCS1A01G276500.1	Wheat	plastid	54.67	17.34
TraesCS1D01G276000.1	Wheat	plastid	54.0	17.12
TraesCS1B01G285700.2	Wheat	plastid	53.33	16.91
KXG22108	Sorghum	plastid	52.67	16.77
Os05t0443800-01	Rice	plastid	52.67	16.74
HORVU1Hr1G073840.4	Barley	plastid	48.67	13.54
Zm00001d010135_P003	Maize	plastid	46.0	13.4
CDY19897	Canola	plastid	32.0	11.68
CDY17316	Canola	plastid	32.0	11.68
PGSC0003DMT400006854	Potato	cytosol	26.67	11.4
CDY20776	Canola	plastid	32.0	11.29
CDY06595	Canola	plastid	32.0	11.29

Protein Annotations

Gene3D:3.30.1330.20	MapMan:35.1	GO:A0A078E4A7	EnsemblPlants:CDX95369	ProteinID:CDX95369	ProteinID:CDX95369.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00101074001	InterPro:IPR037103
PRINTS:PR00423	PANTHER:PTHR30314	PANTHER:PTHR30314:SF14	SMART:SM00865	SUPFAM:SSF55307	TMHMM:TMhelix
InterPro:Tub_FtsZ_C	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EF42F0	SEG:seg

Description

BnaC04g27890D

Coordinates

chrLK031888:-:726315..727232

Molecular Weight (calculated)

16290.8 Da

IEP (calculated)

8.632

GRAVY (calculated)

0.159

Length

150 amino acids

Sequence
(BLAST)

001: MICFVKGYRG ISDNITIPGL VNVDFADVRA IMANAGSSLM GVGTATDAYC YRLPLKWNQS DNVCVLVITI IIIIIFGTVV DPSFSGQVSI TLIATGFKRQ
101: EEGERKPLQG TQVDASMGVT RRSSSSFTEG SSIEIPDFLK KKGRSCYPRL

Best Arabidopsis Sequence Match ( AT2G36250.1 )
(BLAST)

001: MATYVSPCFT PSDSRLLTVL RKNVLPENHL GRLNSIRTID SKKNRVVVAA QKSESSPIRN SPRHYQSQAQ DPFLNLHPEI SMLRGEGTST IVNPRKETSS
101: GPVVEDFEEP SAPSNYNEAR IKVIGVGGGG SNAVNRMIES EMSGVEFWIV NTDIQAMRMS PVLPDNRLQI GKELTRGLGA GGNPEIGMNA ARESKEVIEE
201: ALYGSDMVFV TAGMGGGTGT GAAPVIAGIA KAMGILTVGI ATTPFSFEGR RRTVQAQEGL ASLRDNVDTL IVIPNDKLLT AVSQSTPVTE AFNLADDILR
301: QGVRGISDII TIPGLVNVDF ADVRAIMANA GSSLMGIGTA TGKSRARDAA LNAIQSPLLD IGIERATGIV WNITGGSDLT LFEVNAAAEV IYDLVDPTAN
401: LIFGAVVDPA LSGQVSITLI ATGFKRQEEG EGRTVQMVQA DAASVGATRR PSSSFRESGS VEIPEFLKKK GSSRYPRV

Arabidopsis Description

FTSZ2-1Cell division protein FtsZ homolog 2-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82533]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.