CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87998	Canola	cytosol, peroxisome, plastid	98.06	98.06
AT2G17270.1	Thale cress	cytosol, mitochondrion, plastid	94.82	94.82
CDY52599	Canola	cytosol	63.11	92.42
CDY66482	Canola	plastid	63.11	79.59
VIT_03s0038g03950.t01	Wine grape	cytosol, peroxisome, plastid	71.52	71.75
GSMUA_Achr1P07210_001	Banana	cytosol	66.99	65.71
PGSC0003DMT400038023	Potato	cytosol	65.7	65.7
Zm00001d006315_P001	Maize	mitochondrion	36.89	65.14
TraesCS5A01G354900.1	Wheat	cytosol	67.96	64.42
HORVU5Hr1G079920.2	Barley	cytosol, mitochondrion, plastid	67.31	63.8
TraesCS5D01G362200.1	Wheat	cytosol, peroxisome, plastid	67.31	63.8
EER99327	Sorghum	mitochondrion	65.37	63.52
TraesCS5B01G357100.1	Wheat	cytosol, mitochondrion, plastid	67.31	63.41
Os09t0554000-01	Rice	cytosol, mitochondrion, plastid	36.57	62.09
HORVU5Hr1G087910.3	Barley	cytosol, mitochondrion	67.31	61.54
CDY09847	Canola	cytosol	45.31	50.0
CDX69610	Canola	cytosol	45.31	50.0
CDX85615	Canola	plastid	49.84	43.26
CDX91085	Canola	plastid	49.84	43.14
CDX87003	Canola	plastid	50.16	42.35
CDY37906	Canola	plastid	49.84	42.08
CDX78556	Canola	plastid	49.51	40.37
CDX70537	Canola	plastid	49.51	40.37

Protein Annotations

EnsemblPlants:CDY07867	EnsemblPlantsGene:GSBRNA2T00125041001	Gene3D:1.50.40.10	GO:A0A078F459	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089
PANTHER:PTHR24089:SF412	PFAM:PF00153	PFscan:PS50920	ProteinID:CDY07867	ProteinID:CDY07867.1	SUPFAM:SSF103506
UniParc:UPI0004EB4FA3	UniProt:A0A078F459	MapMan:24.2.13	:	:	:

Description

BnaC03g47550DBnaC03g47550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F459]

Coordinates

chrLK031981:-:631302..633867

Molecular Weight (calculated)

34318.9 Da

IEP (calculated)

10.084

GRAVY (calculated)

0.112

Length

309 amino acids

Sequence
(BLAST)

001: MTSVKRKLDD ELASPWFYTV CTMGGMLSAG TTHLAITPLD VLKVNMQVNP VKYNSIPSGF STLLREHGRS YLWRGWSGKL LGYGVQGGCR FGLYEYFKRL
101: YSNVLPNHNR TSIYFLSSAS AQIFADMALC PFEAIKVRVQ TQPMFAKGLL DGFPRVYRNE GLAGFHRGLF PLWCRNLPFS MVMFSTFEQS VEFIYKNIIQ
201: KRKQDCSKSQ QLGVTCLAGY TAGAVGTIIS NPADVVVSSL YNNKAKNVLQ AVRNIGLVGL FTRSLPVRIT IVGPVITLQW FFYDAIKVLS GFPTSGGVEK
301: PVDATKLAV

Best Arabidopsis Sequence Match ( AT2G17270.1 )
(BLAST)

001: MTRVKSKLDE ELSSPWFYTV CTMGGMLSAG TTHLAITPLD VLKVNMQVNP VKYNSIPSGF STLLREHGHS YLWRGWSGKL LGYGVQGGCR FGLYEYFKTL
101: YSDVLPNHNR TSIYFLSSAS AQIFADMALC PFEAIKVRVQ TQPMFAKGLL DGFPRVYRSE GLAGFHRGLF PLWCRNLPFS MVMFSTFEQS VEFIYQKIIQ
201: KRKQDCSKAQ QLGVTCLAGY TAGAVGTIIS NPADVVLSSL YNNKAKNVLQ AVRNIGFVGL FTRSLPVRIT IVGPVITLQW FFYDAIKVLS GFPTSGGVKK
301: PVDAAKLSV

Arabidopsis Description

MPT1Mitochondrial phosphate carrier protein 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q7DNC3]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.