CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06281	Canola	mitochondrion	95.24	97.9
Bra031595.1-P	Field mustard	mitochondrion	96.6	97.26
CDX93615	Canola	mitochondrion	94.56	95.21
AT1G07830.1	Thale cress	mitochondrion	91.16	93.06
VIT_17s0000g07870.t01	Wine grape	mitochondrion	75.51	79.29
KRH63372	Soybean	mitochondrion	74.83	76.92
KRH54532	Soybean	mitochondrion	72.79	75.35
GSMUA_Achr4P30490_001	Banana	mitochondrion	74.15	75.17
GSMUA_Achr2P09960_001	Banana	mitochondrion	74.83	73.83
PGSC0003DMT400062909	Potato	mitochondrion	70.75	73.24
Zm00001d045500_P001	Maize	mitochondrion	68.03	72.46
TraesCS7A01G060200.1	Wheat	mitochondrion	65.99	70.29
EER87761	Sorghum	mitochondrion	68.71	69.18
TraesCS4A01G429200.1	Wheat	mitochondrion	64.63	66.43
TraesCS3B01G098500.1	Wheat	mitochondrion	64.63	65.52
TraesCS7D01G054700.1	Wheat	mitochondrion	64.63	65.52
Solyc03g114050.2.1	Tomato	plastid	70.07	56.59
HORVU7Hr1G011290.1	Barley	mitochondrion, plastid	65.31	47.06
Zm00001d045001_P001	Maize	nucleus	38.1	43.08

Protein Annotations

Gene3D:1.20.1280.190	MapMan:17.7.1.1.25	GO:A0A078GDJ9	UniProt:A0A078GDJ9	EnsemblPlants:CDY22718	ProteinID:CDY22718
ProteinID:CDY22718.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005761	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00019391001
InterPro:IPR038340	InterPro:MRP-L47_sf	PFAM:PF06984	PANTHER:PTHR21183	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
InterPro:Ribosomal_L47_mit	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0004EBE45F	SEG:seg	:

Description

BnaC08g43520DBnaC08g43520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDJ9]

Coordinates

chrLK032134:-:633570..634821

Molecular Weight (calculated)

17142.9 Da

IEP (calculated)

10.802

GRAVY (calculated)

-0.565

Length

147 amino acids

Sequence
(BLAST)

001: MFLTRFIGRR FLAVAASTRS ESSTAAGAAA ASTARIAKNP LEEFFEFDRS QDEDKPVVYG RGWKASELRL KSWDDLQKLW YVLLKEKNML MTQRQMLQAQ
101: NMMFPNPERI PKVRRSMCRI KHVLTERAIE EPDPRRSAEM KRMVNAM

Best Arabidopsis Sequence Match ( AT1G07830.1 )
(BLAST)

001: MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD SRRSAEMKRM VNGM

Arabidopsis Description

At1g07830/F24B9_7 [Source:UniProtKB/TrEMBL;Acc:Q94JQ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.