CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54532	Soybean	mitochondrion	94.41	95.07
VIT_17s0000g07870.t01	Wine grape	mitochondrion	80.42	82.14
GSMUA_Achr4P30490_001	Banana	mitochondrion	78.32	77.24
Bra031595.1-P	Field mustard	mitochondrion	78.32	76.71
GSMUA_Achr2P09960_001	Banana	mitochondrion	79.72	76.51
PGSC0003DMT400062909	Potato	mitochondrion	75.52	76.06
CDY06281	Canola	mitochondrion	75.52	75.52
Bra018681.1-P	Field mustard	mitochondrion	75.52	75.0
AT1G07830.1	Thale cress	mitochondrion	75.52	75.0
CDY22718	Canola	mitochondrion	76.92	74.83
CDX93615	Canola	mitochondrion	76.22	74.66
EER87761	Sorghum	mitochondrion	74.83	73.29
Zm00001d045500_P001	Maize	mitochondrion	70.63	73.19
TraesCS7A01G060200.1	Wheat	mitochondrion	68.53	71.01
TraesCS7D01G054700.1	Wheat	mitochondrion	69.93	68.97
TraesCS3B01G098500.1	Wheat	mitochondrion	68.53	67.59
TraesCS4A01G429200.1	Wheat	mitochondrion	67.13	67.13
Solyc03g114050.2.1	Tomato	plastid	75.52	59.34
HORVU7Hr1G011290.1	Barley	mitochondrion, plastid	67.13	47.06
Zm00001d045001_P001	Maize	nucleus	39.86	43.85

Protein Annotations

Gene3D:1.20.1280.190	EntrezGene:100812176	MapMan:17.7.1.1.25	EMBL:ACUP02002669	EMBL:BT096357	UniProt:C6TFG9
EnsemblPlantsGene:GLYMA_04G171700	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005761	GO:GO:0005762	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0032543	InterPro:IPR038340	EnsemblPlants:KRH63372	ProteinID:KRH63372	ProteinID:KRH63372.1	InterPro:MRP-L47_sf
PFAM:PF06984	PANTHER:PTHR21183	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L47_mit	SUPFAM:SSF46561
TIGRFAMs:TIGR00012	UniParc:UPI0001B16634	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:42862750..42865480

Molecular Weight (calculated)

16658.2 Da

IEP (calculated)

10.762

GRAVY (calculated)

-0.696

Length

143 amino acids

Sequence
(BLAST)

001: MFLSRTLGRT LFAAAARSKQ YATTAAAAAG REGHNPLQEF FEADRSPDDD KPVVYGRSWK ASELRLKSWD DLHKLWYVLL KEKNMLMTQR QMLNAQNLRF
101: PNPERIPKVR KSMCRIKHVL TERAIEEPDP RRSAEMKRMI NAL

Best Arabidopsis Sequence Match ( AT1G07830.1 )
(BLAST)

001: MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD SRRSAEMKRM VNGM

Arabidopsis Description

At1g07830/F24B9_7 [Source:UniProtKB/TrEMBL;Acc:Q94JQ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.