Factsheet for PGSC0003DMT400062909

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g07870.t01	Wine grape	mitochondrion	80.28	81.43
KRH54532	Soybean	mitochondrion	77.46	77.46
GSMUA_Achr4P30490_001	Banana	mitochondrion	78.87	77.24
KRH63372	Soybean	mitochondrion	76.06	75.52
Solyc03g114050.2.1	Tomato	plastid	95.77	74.73
GSMUA_Achr2P09960_001	Banana	mitochondrion	76.76	73.15
CDY06281	Canola	mitochondrion	72.54	72.03
Bra031595.1-P	Field mustard	mitochondrion	73.94	71.92
Bra018681.1-P	Field mustard	mitochondrion	72.54	71.53
CDY22718	Canola	mitochondrion	73.24	70.75
EER87761	Sorghum	mitochondrion	72.54	70.55
CDX93615	Canola	mitochondrion	72.54	70.55
AT1G07830.1	Thale cress	mitochondrion	71.13	70.14
Zm00001d045500_P001	Maize	mitochondrion	67.61	69.57
TraesCS4A01G429200.1	Wheat	mitochondrion	66.9	66.43
TraesCS7D01G054700.1	Wheat	mitochondrion	67.61	66.21
TraesCS7A01G060200.1	Wheat	mitochondrion	64.08	65.94
TraesCS3B01G098500.1	Wheat	mitochondrion	66.9	65.52
HORVU7Hr1G011290.1	Barley	mitochondrion, plastid	65.49	45.59
Zm00001d045001_P001	Maize	nucleus	40.14	43.85

Protein Annotations

Gene3D:1.20.1280.190	EntrezGene:102587684	MapMan:17.7.1.1.25	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005761
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR038340	UniProt:M1C9R8	InterPro:MRP-L47_sf	PFAM:PF06984	EnsemblPlantsGene:PGSC0003DMG400024483
PGSC:PGSC0003DMG400024483	EnsemblPlants:PGSC0003DMT400062909	PANTHER:PTHR21183	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L47_mit
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI000294F75D	RefSeq:XP_006345029.1	SEG:seg	:

Description

Structural constituent of ribosome [Source:PGSC_GENE;Acc:PGSC0003DMG400024483]

Coordinates

chr3:+:53916250..53923228

Molecular Weight (calculated)

16357.9 Da

IEP (calculated)

10.741

GRAVY (calculated)

-0.537

Length

142 amino acids

Sequence
(BLAST)

001: MLAARLFGRT FLAAAKSESS AAAAASSSAA RTLNPLEQFF EVDRTPEDDK PVVYGRGWKA SELRLKSWDD LQKLWYVLLK EKNMLMTQRQ MLNAQNLRFP
101: NPERISKVRK SMCRIKHVLT ERAIDEADPR RSTEMKRMIN AL

Best Arabidopsis Sequence Match ( AT1G07830.1 )
(BLAST)

001: MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD SRRSAEMKRM VNGM

Arabidopsis Description

At1g07830/F24B9_7 [Source:UniProtKB/TrEMBL;Acc:Q94JQ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.