Factsheet for Solyc03g114050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062909	Potato	mitochondrion	74.73	95.77
VIT_17s0000g07870.t01	Wine grape	mitochondrion	61.54	80.0
KRH54532	Soybean	mitochondrion	60.44	77.46
KRH63372	Soybean	mitochondrion	59.34	75.52
GSMUA_Achr4P30490_001	Banana	mitochondrion	59.89	75.17
CDY06281	Canola	mitochondrion	56.59	72.03
GSMUA_Achr2P09960_001	Banana	mitochondrion	58.79	71.81
Bra031595.1-P	Field mustard	mitochondrion	57.14	71.23
Bra018681.1-P	Field mustard	mitochondrion	56.04	70.83
Zm00001d045500_P001	Maize	mitochondrion	53.3	70.29
CDY22718	Canola	mitochondrion	56.59	70.07
EER87761	Sorghum	mitochondrion	56.04	69.86
CDX93615	Canola	mitochondrion	56.04	69.86
AT1G07830.1	Thale cress	mitochondrion	54.95	69.44
TraesCS7A01G060200.1	Wheat	mitochondrion	50.0	65.94
TraesCS4A01G429200.1	Wheat	mitochondrion	51.1	65.03
TraesCS7D01G054700.1	Wheat	mitochondrion	51.65	64.83
TraesCS3B01G098500.1	Wheat	mitochondrion	51.1	64.14
HORVU7Hr1G011290.1	Barley	mitochondrion, plastid	51.1	45.59
Zm00001d045001_P001	Maize	nucleus	31.32	43.85

Protein Annotations

Gene3D:1.20.1280.190	MapMan:17.7.1.1.25	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005761	GO:GO:0005762
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0032543	InterPro:IPR038340	UniProt:K4BKQ7	InterPro:MRP-L47_sf	PFAM:PF06984
PANTHER:PTHR21183	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L47_mit	SUPFAM:SSF46561	EnsemblPlantsGene:Solyc03g114050.2
EnsemblPlants:Solyc03g114050.2.1	TIGRFAMs:TIGR00012	UniParc:UPI0002767FE9	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:64090165..64097303

Molecular Weight (calculated)

21073.7 Da

IEP (calculated)

10.265

GRAVY (calculated)

-0.409

Length

182 amino acids

Sequence
(BLAST)

001: MMVREEGKYE LLASHFSTKL EPASQEEFKP VIFSAVHLFN LVSVMLAARL FGRTFLAAAK SESSAAPAAA RTLNPLEQFF EVDRTPEDDK PVVYGRGWKA
101: SELRLKSWDD LQKLWYVLLK EKNMLMTQRQ MLNAQNLRFP NPERISKVRK SMCRIKHVLT ERAIDEADPR RSTEMKRMIN AL

Best Arabidopsis Sequence Match ( AT1G07830.1 )
(BLAST)

001: MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD SRRSAEMKRM VNGM

Arabidopsis Description

At1g07830/F24B9_7 [Source:UniProtKB/TrEMBL;Acc:Q94JQ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.