Factsheet for VIT_17s0000g07870.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63372	Soybean	mitochondrion	82.14	80.42
PGSC0003DMT400062909	Potato	mitochondrion	81.43	80.28
KRH54532	Soybean	mitochondrion	80.0	78.87
GSMUA_Achr4P30490_001	Banana	mitochondrion	81.43	78.62
CDY06281	Canola	mitochondrion	78.57	76.92
Bra031595.1-P	Field mustard	mitochondrion	80.0	76.71
GSMUA_Achr2P09960_001	Banana	mitochondrion	80.71	75.84
Bra018681.1-P	Field mustard	mitochondrion	77.86	75.69
CDY22718	Canola	mitochondrion	79.29	75.51
AT1G07830.1	Thale cress	mitochondrion	77.14	75.0
CDX93615	Canola	mitochondrion	77.86	74.66
EER87761	Sorghum	mitochondrion	74.29	71.23
Zm00001d045500_P001	Maize	mitochondrion	70.0	71.01
TraesCS7A01G060200.1	Wheat	mitochondrion	67.86	68.84
TraesCS4A01G429200.1	Wheat	mitochondrion	68.57	67.13
TraesCS7D01G054700.1	Wheat	mitochondrion	69.29	66.9
TraesCS3B01G098500.1	Wheat	mitochondrion	68.57	66.21
Solyc03g114050.2.1	Tomato	plastid	80.0	61.54
HORVU7Hr1G011290.1	Barley	mitochondrion, plastid	67.14	46.08
Zm00001d045001_P001	Maize	nucleus	41.43	44.62

Protein Annotations

Gene3D:1.20.1280.190	EntrezGene:100248410	wikigene:100248410	MapMan:17.7.1.1.25	ProteinID:CBI15073	ProteinID:CBI15073.3
UniProt:D7SHW3	EMBL:FN594950	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005761	GO:GO:0005762
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0032543	InterPro:IPR038340	EntrezGene:LOC100248410	wikigene:LOC100248410	InterPro:MRP-L47_sf
PFAM:PF06984	PANTHER:PTHR21183	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	InterPro:Ribosomal_L47_mit	SUPFAM:SSF46561
TIGR:TC54395	TIGRFAMs:TIGR00012	UniParc:UPI00015C91E8	ArrayExpress:VIT_17s0000g07870	EnsemblPlantsGene:VIT_17s0000g07870	EnsemblPlants:VIT_17s0000g07870.t01
unigene:Vvi.13834	RefSeq:XP_002283452	RefSeq:XP_002283452.1	RefSeq:XP_002283459	RefSeq:XP_002283459.1	RefSeq:XP_010663204.1
RefSeq:XP_010663205.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:8819102..8830738

Molecular Weight (calculated)

16328.9 Da

IEP (calculated)

10.636

GRAVY (calculated)

-0.623

Length

140 amino acids

Sequence
(BLAST)

001: MFVRRVFGRA LLAAAKSEPS AAGAATARAG YNPLEEFFEA DRSPDEDKPV VYGRGWKASE LRLKSWDDLH KLWYILLKEK NMLMTQRQML QSQNLRFPNP
101: ERIPKVRKSM CRIKHVLTER AIEEPDPRRS VEMKRMINAL

Best Arabidopsis Sequence Match ( AT1G07830.1 )
(BLAST)

001: MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD SRRSAEMKRM VNGM

Arabidopsis Description

At1g07830/F24B9_7 [Source:UniProtKB/TrEMBL;Acc:Q94JQ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.