CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21526	Canola	peroxisome	39.86	39.46
CDY66771	Canola	cytosol	14.78	37.39
CDX81435	Canola	cytosol	33.68	23.73
CDX93108	Canola	vacuole	34.02	22.05
CDY17183	Canola	endoplasmic reticulum, vacuole	34.71	21.86
CDY70042	Canola	vacuole	33.33	21.6
CDY19500	Canola	vacuole	34.36	21.6
CDY66139	Canola	extracellular	35.74	21.4
CDY46627	Canola	vacuole	33.33	21.37
CDY23340	Canola	vacuole	34.02	21.11
CDX90124	Canola	vacuole	33.33	21.09
CDY61693	Canola	vacuole	32.99	21.05
CDX80725	Canola	extracellular, vacuole	34.36	21.01
CDY48945	Canola	extracellular, vacuole	34.36	20.96
CDY11750	Canola	endoplasmic reticulum, vacuole	32.99	20.82
CDY51660	Canola	endoplasmic reticulum, extracellular, vacuole	29.9	19.73
CDY39011	Canola	vacuole	27.84	19.29
CDY37202	Canola	extracellular	29.9	19.08
OQU77701	Sorghum	vacuole	15.12	13.02
CDY34806	Canola	vacuole	2.06	5.0
CDY21525	Canola	vacuole	2.41	3.54
CDX76846	Canola	vacuole	1.37	3.36
CDY68103	Canola	vacuole	1.37	2.06
GSMUA_Achr10P...	Banana	vacuole	0.34	0.95

Protein Annotations

MapMan:19.4.2.2	Gene3D:3.40.50.11320	Gene3D:3.40.50.1820	GO:A0A078JFZ4	UniProt:A0A078JFZ4	InterPro:AB_hydrolase
EnsemblPlants:CDY65614	ProteinID:CDY65614	ProteinID:CDY65614.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004185
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00046915001
InterPro:IPR029058	PFAM:PF00450	ScanProsite:PS00560	PANTHER:PTHR11802	PANTHER:PTHR11802:SF87	InterPro:Peptidase_S10
SUPFAM:SSF53474	InterPro:Ser_caboxypep_his_AS	UniParc:UPI0004EE5C1A	:	:	:

Description

BnaCnng47980DBnaCnng47980D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JFZ4]

Coordinates

chrLK034860:-:19102..20257

Molecular Weight (calculated)

33335.6 Da

IEP (calculated)

7.300

GRAVY (calculated)

-0.232

Length

291 amino acids

Sequence
(BLAST)

001: NLINITNLGV LTIILFTGHY VPQLAKKIYH YNKTFNKSII NLKGFMVGNG DTDRHYDRLG AVTYWWSHAM ISDRSYNSIL KHCSFTENTN SNECDYALYY
101: ATVVEFGQVN GYSIYSPLCV PKTNQTKFMH GGILVEEEDP CTESYAEIYY NRPDVQRAMH ANLTSIPYKW TVCNEILFKY WDWGNSDHSM LPTYKELMAA
201: GLRIWVFSGD TDSVVPVTAT RLSISHLNLT VKTRWYPWYS GNQVGGWTEV YEGLTFATVR GAGHEVPVLQ PERALILLRS FLAGKELPRS Y

Best Arabidopsis Sequence Match ( AT2G24000.2 )
(BLAST)

001: MARTHLLFLL FVLLSLATSS TSTKEQEEDR IKALPGQPKV GFSQFSGYVT VNESHGRSLF YWLTESSSHS PHTKPLLLWL NGGPGCSSIA YGASEEIGPF
101: RISKTGCNLY LNNFSWNTGH YVPQLAQKIH EYNNAYKNPV INLKGFMVGN PEMDKNNDRL GTITYWWSHA MISDASYNRI LKNCDFTADR FSKECDSAIY
201: VAAADFGDID QYSIYTPKCV PPQDQTNQTK FEQMMQMHTT KRFLEDQYDP CTENYAEIYY NRPEVQRAMH ANHTAIPYKW TACSDSVFNN WNWRDSDNSM
301: LPIYKELIAA GLRIWVYSGD TDSVIPVTAT RYSLGKLNLR VKTRWYPWYS GNQVGGRTEV YEGLTFVTVR GAGHEVPFFQ PQSALILLRS FLAGNELSRS
401: Y

Arabidopsis Description

SCPL22Serine carboxypeptidase-like 22 [Source:UniProtKB/Swiss-Prot;Acc:Q1PF08]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.