CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040356_P001	Maize	mitochondrion, plastid	92.13	92.13
TraesCS3D01G186200.1	Wheat	plastid	85.84	86.04
TraesCS3A01G181400.1	Wheat	plastid	85.62	85.23
TraesCS3B01G211400.1	Wheat	plastid	85.62	85.23
Os01t0265000-00	Rice	plastid	85.84	83.59
GSMUA_Achr6P32200_001	Banana	plastid	70.34	67.17
KRH73442	Soybean	plastid	61.12	60.71
Solyc01g088310.2.1	Tomato	plastid	61.35	60.53
VIT_06s0009g01740.t01	Wine grape	plastid	60.67	57.94
EES07263	Sorghum	plastid	56.85	55.36
PGSC0003DMT400017587	Potato	plastid	28.09	54.59

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	EntrezGene:8085832	InterPro:BchP_ChlP_pln/prok	UniProt:C5XGI2
EnsemblPlants:EES00532	ProteinID:EES00532	ProteinID:EES00532.1	InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188
GO:GO:0055114	GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	PFAM:PF01494
PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF5	EnsemblPlantsGene:SORBI_3003G122100	SUPFAM:SSF51905	TIGRFAMs:TIGR02023
TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI0001A849F2	RefSeq:XP_002455412.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:11124768..11126509

Molecular Weight (calculated)

47939.8 Da

IEP (calculated)

9.020

GRAVY (calculated)

-0.049

Length

445 amino acids

Sequence
(BLAST)

001: MAAACYYPAR IMISCSATTT TTSSSPSARP LRVAVVGGGP AGASAAEALA SAGARTFLLE RSPAGAKPCG GAIPLCMLDE FAIPRDLVDR RVTRMRVVSP
101: SNLAADFSRA LPPGAHIPML RREVLDSFLR RRAAEAGAEL VPGLVTSLSL PAGPADPYLV HYISSSSPEG AGRGVLEVDA IVGADGANSR VAREVGAGDY
201: TTAIAFQERI RLPDAAMGYY DDLAEMYVGG DVSPDFYGWV FPKCDHVAVG TGTVAAKPEI KRLQSGIRAR AGPKIAGGRV VKVEAHPIPE HPRPRRVVGR
301: VALVGDAAGY VTRCSGEGIY FAAKSGRLCG QAMAEEWART GAVTEAGLRR GYLRRWDDEF LLMFRFLDLL QRVFYGGNAG REALVEMCAD EYVQRRTFES
401: YLYKRMVPGE PWGDLRLLWR TVASMVRCGV IGREVERLRR LELQG

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.