Factsheet for Solyc01g088310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017587	Potato	plastid	42.35	83.41
VIT_06s0009g01740.t01	Wine grape	plastid	70.51	68.24
KRH73442	Soybean	plastid	67.63	68.08
EES00532	Sorghum	plastid	60.53	61.35
Solyc03g115980.1.1	Tomato	plastid	62.97	61.21
GSMUA_Achr6P32200_001	Banana	plastid	62.97	60.94
TraesCS3D01G186200.1	Wheat	plastid	59.2	60.14
Zm00001d040356_P001	Maize	mitochondrion, plastid	59.2	60.0
TraesCS3B01G211400.1	Wheat	plastid	59.2	59.73
TraesCS3A01G181400.1	Wheat	plastid	58.76	59.28
Os01t0265000-00	Rice	plastid	57.65	56.89

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	InterPro:BchP_ChlP_pln/prok	InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016628	GO:GO:0045550
GO:GO:0051188	GO:GO:0055114	GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188
UniProt:K4AYM1	PFAM:PF01494	PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF5	SUPFAM:SSF51905
EnsemblPlantsGene:Solyc01g088310.2	EnsemblPlants:Solyc01g088310.2.1	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI0002761765
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:83083461..83085054

Molecular Weight (calculated)

49871.3 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.164

Length

451 amino acids

Sequence
(BLAST)

001: MAAQTYFHLH SLRCLPVPLK IQNPQNQTHR FKRNPVVCKL RVAVIGGGPA GSSAAEALAT GGIETFLFER SPATAKPCGG AIPLCMLDEF SIPLNLIDRR
101: VSQMRIVSPS NLVVDFGKTL KPHEFIAMLR REVLDSFLRQ RAESSGANLL KALVTNLVVP TSSLEPYVIH YTMDNCQHQL AVDAIIGADG ANSRVAKSIK
201: AGNYTTAIAF QERIKLPEDK MGYYENLAEM YVGNDVSPDF YAWVFPKCDH VAVGTGTVCS KSNIKSFQHA IRARAKSKIE GGKVIKVEAH PIPEHPRPVR
301: VRGRVALVGD AAGYVTKCSG EGIYFAAKSG RICGEAIVKA SEGGDSMINE DDLKREYLRK WDDKYFTTFK FLDVLQKVFY GNNAAREALV ELCGDEYVQR
401: MTFDSYLYKK LASGNRWEDA KMAMNTISSL VRCNIMGREV EASAQKILSR V

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.