Factsheet for VIT_06s0009g01740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73442	Soybean	plastid	69.53	72.32
Solyc01g088310.2.1	Tomato	plastid	68.24	70.51
PGSC0003DMT400017587	Potato	plastid	31.76	64.63
TraesCS3D01G186200.1	Wheat	plastid	58.58	61.49
GSMUA_Achr6P32200_001	Banana	plastid	60.73	60.73
EES00532	Sorghum	plastid	57.94	60.67
Zm00001d040356_P001	Maize	mitochondrion, plastid	57.94	60.67
TraesCS3A01G181400.1	Wheat	plastid	58.15	60.63
TraesCS3B01G211400.1	Wheat	plastid	57.73	60.18
VIT_17s0000g06280.t01	Wine grape	plastid	58.58	58.46
Os01t0265000-00	Rice	plastid	56.44	57.55

Protein Annotations

KEGG:00900+1.3.1.83	EntrezGene:100253115	wikigene:100253115	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	InterPro:BchP_ChlP_pln/prok
ProteinID:CCB49141	ProteinID:CCB49141.1	UniProt:F6H9Z1	InterPro:FAD/NAD-bd_sf	EMBL:FN595504	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	InterPro:Geranylgeranyl_Rdtase_fam
InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	EntrezGene:LOC100253115	wikigene:LOC100253115	PRINTS:PR00420	PANTHER:PTHR42685
PANTHER:PTHR42685:SF5	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI00015CA126
ArrayExpress:VIT_06s0009g01740	EnsemblPlantsGene:VIT_06s0009g01740	EnsemblPlants:VIT_06s0009g01740.t01	unigene:Vvi.20287	RefSeq:XP_002273133	RefSeq:XP_002273133.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:13743687..13745250

Molecular Weight (calculated)

51134.6 Da

IEP (calculated)

9.078

GRAVY (calculated)

-0.162

Length

466 amino acids

Sequence
(BLAST)

001: MAAATPLYLQ NKPHHHHHHH LSSLFSSSLP FSIKTNPFST SKPSSLIISS ISNPPLSGRK LRAAVIGGGP AGSSAAETLA AGGIETFLFE RSPASSKPCG
101: GAIPLCMLEE FSIPPELVDR RVTRMKIISP SNLTVDFGKT LKPNEYIAML RREVLDSFLR RRAESAGATA ITALVTSLDL PSSPASPYVI HYNAGGSRHS
201: LAVDVVIGAD GANSRVAKSI KAGDYSCAIA FQERIKLPEE KMEYYQDLAE MYVGNDVSPD FYAWVFPKCD HVAVGTGTVC SKQNIKLYQR GIRERVEPKI
301: SGGKVIKVEA HPIPEHPRPV RIRGRVALVG DAAGYVTKCS GEGIYFAAKS GKMCAEAILK ASEGGLRMIS EEDLRREYLK EWDGKYLVTY RLLDLLHRVF
401: YGSNAAREAL VELCGNEYVQ RMTFESYLYK RLAEGDGWED AKMVFNTFGS LIRCKIVGRD VQALRV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.