Factsheet for VIT_17s0000g06280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0040g00390.t01
VIT_12s0059g00270.t01
VIT_18s0072g01030.t01
VIT_19s0014g03160.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	VIT_12s0059g00270.t01	AT1G03630.1	22212719
AT1G74470.1	VIT_19s0014g03160.t01	AT1G03630.1	22212719
AT1G74470.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088
AT1G74470.1	VIT_08s0040g00390.t01	AT3G56940.1	22212719
AT1G74470.1	VIT_12s0059g00270.t01	AT4G27440.1	22212719
AT1G74470.1	VIT_19s0014g03160.t01	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56906	Soybean	plastid	85.87	86.8
KRH03484	Soybean	plastid	85.65	86.58
PGSC0003DMT400050234	Potato	plastid	85.87	86.42
Solyc03g115980.1.1	Tomato	plastid	85.65	86.21
CDY65895	Canola	plastid	80.51	83.93
CDY42418	Canola	plastid	81.16	81.33
Bra008152.1-P	Field mustard	plastid	80.94	81.12
CDX96548	Canola	plastid	80.94	81.12
CDX73093	Canola	plastid	80.94	81.12
Bra015908.1-P	Field mustard	plastid	80.51	80.69
AT1G74470.1	Thale cress	plastid	80.51	80.51
GSMUA_Achr8P24130_001	Banana	plastid	74.09	76.04
EES07263	Sorghum	plastid	74.09	75.71
Zm00001d018034_P001	Maize	plastid	74.09	75.71
TraesCS6A01G307700.1	Wheat	plastid	74.52	75.32
TraesCS6B01G336300.1	Wheat	plastid	74.52	75.32
TraesCS6D01G286900.1	Wheat	plastid	74.52	75.32
Os02t0744900-01	Rice	plastid	74.52	75.16
HORVU6Hr1G075900.1	Barley	plastid	74.3	75.11
VIT_06s0009g01740.t01	Wine grape	plastid	58.46	58.58

Protein Annotations

KEGG:00900+1.3.1.83	EntrezGene:100243277	wikigene:100243277	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	EMBL:AM448188
InterPro:BchP_ChlP_pln/prok	ProteinID:CAN61003	ProteinID:CAN61003.1	ProteinID:CCB43082	ProteinID:CCB43082.1	UniProt:F6GT73
InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016020
GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam
InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	EntrezGene:LOC100243277	wikigene:LOC100243277	PFAM:PF01494	PRINTS:PR00420
PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	TIGR:TC60435	TIGR:TC62278	TIGRFAMs:TIGR02023
TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI00015C8C39	ArrayExpress:VIT_17s0000g06280	EnsemblPlantsGene:VIT_17s0000g06280	EnsemblPlants:VIT_17s0000g06280.t01
unigene:Vvi.18599	RefSeq:XP_002284906	RefSeq:XP_002284906.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:6820975..6822734

Molecular Weight (calculated)

51270.0 Da

IEP (calculated)

9.403

GRAVY (calculated)

-0.220

Length

467 amino acids

Sequence
(BLAST)

001: MASISLKTFV GLRQSSSDTY NSGHVFPVKH LPAQPASRGL RIVAGKFSPK VTGRNLRVAV VGGGPAGGSA AETLAKGGIE TFLIERKLDN CKPCGGAIPL
101: CMVGEFDLPL DIIDRRVTKM KMISPSNVAV DIGQTLKPHE YIGMVRREVL DSYLRERASA SGATVINGLF LKMDAPKGAT APYVLHYTGY DSKTGGVGER
201: RTLEVDAVIG ADGANSRVAK FIGAGDYDYA IAFQERIKIP DDKMVYYENL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKSDIKKF QLATRLRAKE
301: KILGGKIIRV EAHPIPEHPR PRRLAGRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSENGKRM VDEGDLRKYL EKWDKTYWPT YKVLDVLQKV
401: FYRSNPAREA FVEMCADEYV QKMTFDSYLY KKVVPGNPLE DLKLAVNTIG SLVRANALRR EMDKMSV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.