Factsheet for VIT_08s0040g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g077040.1.1	Tomato	plastid	87.56	87.13
PGSC0003DMT400018519	Potato	plastid	87.56	87.13
Bra003256.1-P	Field mustard	plastid	86.57	85.09
CDX67664	Canola	plastid	86.32	84.84
CDX72094	Canola	plastid	86.32	84.84
CDY51267	Canola	plastid	86.07	84.6
CDY47386	Canola	cytosol	28.61	84.56
AT3G56940.1	Thale cress	plastid	85.82	84.35
GSMUA_Achr10P...	Banana	plastid	85.07	84.03
GSMUA_Achr3P25050_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.84	82.84
KRG95003	Soybean	plastid	86.07	81.6
EES02775	Sorghum	plastid	82.59	81.57
Zm00001d040463_P001	Maize	plastid	82.34	81.53
Os01t0279100-01	Rice	plastid	82.59	81.37
KRH66642	Soybean	plastid	85.57	81.13
Zm00001d008230_P001	Maize	mitochondrion, plastid	82.34	81.13
CDX76019	Canola	cytosol	22.64	77.12
Bra014662.1-P	Field mustard	cytosol	22.64	77.12
TraesCS3A01G191700.4	Wheat	plastid	80.35	72.26
GSMUA_Achr8P05770_001	Banana	plastid	55.97	71.89
TraesCS3D01G194300.1	Wheat	plastid	80.35	71.62
TraesCS3B01G219700.1	Wheat	golgi, plastid	80.1	71.4
HORVU3Hr1G039930.2	Barley	plastid	80.35	71.3
Bra007284.1-P	Field mustard	cytosol	86.82	41.7
CDY27178	Canola	mitochondrion	86.82	38.78

Protein Annotations

KEGG:00860+1.14.13.81	EntrezGene:100241461	wikigene:100241461	MapMan:7.12.6.3.1	EMBL:AM462678	InterPro:AcsF
ProteinID:CAN79041	ProteinID:CAN79041.1	ProteinID:CCB57154	ProteinID:CCB57154.1	UniProt:F6HQS3	EMBL:FN596008
InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0046872
GO:GO:0048529	GO:GO:0055114	EntrezGene:LOC100241461	wikigene:LOC100241461	HAMAP:MF_01840	PFAM:PF02915
PANTHER:PTHR31053	PANTHER:PTHR31053:SF2	InterPro:Rubrerythrin	SUPFAM:SSF47240	TIGR:TC51778	TIGR:TC54925
TIGRFAMs:TIGR02029	UniParc:UPI00015CA336	ArrayExpress:VIT_08s0040g00390	EnsemblPlantsGene:VIT_08s0040g00390	EnsemblPlants:VIT_08s0040g00390.t01	unigene:Vvi.1182
RefSeq:XP_002283892	RefSeq:XP_002283892.1	:	:	:	:

Description

No Description!

Coordinates

chr8:+:11320926..11323200

Molecular Weight (calculated)

46810.3 Da

IEP (calculated)

8.714

GRAVY (calculated)

-0.337

Length

402 amino acids

Sequence
(BLAST)

001: MAAEMALVKP ISKFSTSTPN PRAPYSKVFR ISMSATSQPS TGKRPSKKAA KTAIKETLLT PRFYTTDFDE METLFNTEIN KNLNQTEFEA LLQEFKTDYN
101: QTHFVRNKEF KEAADKIQGP LRQIFVEFLE RSCTAEFSGF LLYKELGRRL KKTNPVVAEI FSLMSRDEAR HAGFLNKGLS DFNLALDLGF LTKARKYTFF
201: KPKFIFYATY LSEKIGYWRY ITIYRHLKEN PEYQLYPIFK YFENWCQDEN RHGDFFSALM KAQPQFLNDW KAKLWARFFC LSVYVTMYLN DCQRTDFYEG
301: IGLNTKEFDM HVIIETNRTT ARIFPAVLDV ENPEFKRKLD RMVEINQQLI AVGESDDIPV VKNLKKIPLI AGLASEILAA YLMPPVESGS VDFAEFEPQL
401: VY

Best Arabidopsis Sequence Match ( AT3G56940.1 )
(BLAST)

001: MAAEMALVKP ISKFSSPKLS NPSKFLSGRR FSTVIRMSAS SSPPPPTTAT SKSKKGTKKE IQESLLTPRF YTTDFEEMEQ LFNTEINKNL NEAEFEALLQ
101: EFKTDYNQTH FVRNKEFKEA ADKLQGPLRQ IFVEFLERSC TAEFSGFLLY KELGRRLKKT NPVVAEIFSL MSRDEARHAG FLNKGLSDFN LALDLGFLTK
201: ARKYTFFKPK FIFYATYLSE KIGYWRYITI YRHLKENPEF QCYPIFKYFE NWCQDENRHG DFFSALMKAQ PQFLNDWQAK LWSRFFCLSV YVTMYLNDCQ
301: RTNFYEGIGL NTKEFDMHVI IETNRTTARI FPAVLDVENP EFKRKLDRMV VSYEKLLAIG ETDDASFIKT LKRIPLVTSL ASEILAAYLM PPVESGSVDF
401: AEFEPNLVY

Arabidopsis Description

CRD1Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M591]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.