Factsheet for TraesCS3D01G194300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923
plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G219700.1	Wheat	golgi, plastid	99.11	99.11
HORVU3Hr1G039930.2	Barley	plastid	93.35	92.94
TraesCS3A01G191700.4	Wheat	plastid	91.35	92.17
Os01t0279100-01	Rice	plastid	80.49	88.97
EES02775	Sorghum	plastid	80.04	88.7
Zm00001d008230_P001	Maize	mitochondrion, plastid	79.82	88.24
Zm00001d040463_P001	Maize	plastid	78.71	87.44
GSMUA_Achr10P...	Banana	plastid	74.06	82.06
GSMUA_Achr3P25050_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	72.51	81.34
VIT_08s0040g00390.t01	Wine grape	plastid	71.62	80.35
PGSC0003DMT400018519	Potato	plastid	71.84	80.2
Solyc10g077040.1.1	Tomato	plastid	71.4	79.7
CDX72094	Canola	plastid	71.84	79.22
Bra003256.1-P	Field mustard	plastid	71.84	79.22
CDX67664	Canola	plastid	71.62	78.97
CDY51267	Canola	plastid	71.4	78.73
AT3G56940.1	Thale cress	plastid	70.95	78.24
CDY47386	Canola	cytosol	23.5	77.94
KRG95003	Soybean	plastid	72.28	76.89
KRH66642	Soybean	plastid	71.18	75.71
CDX76019	Canola	cytosol	18.85	72.03
Bra014662.1-P	Field mustard	cytosol	18.85	72.03
GSMUA_Achr8P05770_001	Banana	plastid	49.0	70.61
Bra007284.1-P	Field mustard	cytosol	73.17	39.43
CDY27178	Canola	mitochondrion	73.17	36.67

Protein Annotations

KEGG:00860+1.14.13.81	MapMan:7.12.6.3.1	InterPro:AcsF	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016020	GO:GO:0016043	GO:GO:0016491	GO:GO:0046872	GO:GO:0048529
GO:GO:0055114	GO:GO:1901401	HAMAP:MF_01840	PFAM:PF02915	PANTHER:PTHR31053	PANTHER:PTHR31053:SF2
InterPro:Rubrerythrin	SUPFAM:SSF47240	TIGRFAMs:TIGR02029	EnsemblPlantsGene:TraesCS3D01G194300	EnsemblPlants:TraesCS3D01G194300.1	TIGR:cd01047
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:185332463..185334655

Molecular Weight (calculated)

51864.6 Da

IEP (calculated)

9.271

GRAVY (calculated)

-0.250

Length

451 amino acids

Sequence
(BLAST)

001: MSALSSSCSA LLCCIYTAPS PFPRTLRSRS ALSVSHRMAS AMELSLLNPA MHHHGIAAKT ASHLPVLPAR RGAVRFRVRA AAAAPPAPAA KPGSPKKRGK
101: TEVNESLLTP RFYTTDFDEM EQLFNAEINK QLNQDEFDAL LQEFKTDYNQ THFIRNPEFK EAADKMQGPL RQIFVEFLER SCTAEFSGFL LYKELGRRLK
201: KTNPVVAEIF SLMSRDEARH AGFLNKGLSD FNLALDLGFL TKARKYTFFK PKFIFYATYL SEKIGYWRYI TIFRHLKANP EYQVYPIFKY FENWCQDENR
301: HGDFFSALLK AQPQFLNDWK AKLWSRFFCL SVYITMYLND CQRSAFYEGI GLNTKEFDMH VIYETNRTTA RIFPAVPDVE NPEFKRKLDR MVDINLKIIS
401: IGESNDMPLV KNLKRVPLIA QLVSEIIAAY LMPPIESGSV DFAEFEPKLV Y

Best Arabidopsis Sequence Match ( AT3G56940.1 )
(BLAST)

001: MAAEMALVKP ISKFSSPKLS NPSKFLSGRR FSTVIRMSAS SSPPPPTTAT SKSKKGTKKE IQESLLTPRF YTTDFEEMEQ LFNTEINKNL NEAEFEALLQ
101: EFKTDYNQTH FVRNKEFKEA ADKLQGPLRQ IFVEFLERSC TAEFSGFLLY KELGRRLKKT NPVVAEIFSL MSRDEARHAG FLNKGLSDFN LALDLGFLTK
201: ARKYTFFKPK FIFYATYLSE KIGYWRYITI YRHLKENPEF QCYPIFKYFE NWCQDENRHG DFFSALMKAQ PQFLNDWQAK LWSRFFCLSV YVTMYLNDCQ
301: RTNFYEGIGL NTKEFDMHVI IETNRTTARI FPAVLDVENP EFKRKLDRMV VSYEKLLAIG ETDDASFIKT LKRIPLVTSL ASEILAAYLM PPVESGSVDF
401: AEFEPNLVY

Arabidopsis Description

CRD1Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M591]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.