CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76019	Canola	cytosol	79.41	91.53
CDX72094	Canola	plastid	94.12	31.3
CDX67664	Canola	plastid	90.44	30.07
CDY51267	Canola	plastid	89.71	29.83
VIT_08s0040g00390.t01	Wine grape	plastid	84.56	28.61
AT3G56940.1	Thale cress	plastid	84.56	28.12
EES02775	Sorghum	plastid	83.09	27.76
GSMUA_Achr10P...	Banana	plastid	82.35	27.52
Zm00001d040463_P001	Maize	plastid	81.62	27.34
Zm00001d008230_P001	Maize	mitochondrion, plastid	81.62	27.21
GSMUA_Achr3P25050_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.15	27.11
PGSC0003DMT400018519	Potato	plastid	80.15	26.98
Solyc10g077040.1.1	Tomato	plastid	80.15	26.98
Os01t0279100-01	Rice	plastid	80.88	26.96
GSMUA_Achr8P05770_001	Banana	plastid	61.76	26.84
KRH66642	Soybean	plastid	83.09	26.65
KRG95003	Soybean	plastid	82.35	26.42
TraesCS3A01G191700.4	Wheat	plastid	77.94	23.71
TraesCS3D01G194300.1	Wheat	plastid	77.94	23.5
HORVU3Hr1G039930.2	Barley	plastid	77.94	23.4
TraesCS3B01G219700.1	Wheat	golgi, plastid	77.21	23.28
CDY27178	Canola	mitochondrion	94.12	14.22

Protein Annotations

EnsemblPlants:CDY47386	EnsemblPlantsGene:GSBRNA2T00087285001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0046872
GO:GO:0048529	GO:GO:0055114	InterPro:AcsF	KEGG:00860+1.14.13.81	PANTHER:PTHR31053	PANTHER:PTHR31053:SF2
ProteinID:CDY47386	ProteinID:CDY47386.1	UniParc:UPI0004EE21FF	UniProt:A0A078IC27	MapMan:35.1	:

Description

BnaC04g24770DBnaC04g24770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC27]

Coordinates

chrLK032713:+:112717..113269

Molecular Weight (calculated)

15508.9 Da

IEP (calculated)

4.921

GRAVY (calculated)

0.011

Length

136 amino acids

Sequence
(BLAST)

001: MTGKPSSLWS RFFCLSVHVT MYLNDCQRTD FYEGIGLNTK EFDMHIIIET NRTTARIFPA VLDVENPEFK RKLDRMVVIN EKLMAVGQTD DPSFVKNLKR
101: IPLIAGLVSE ILAAYLMPPV ESGSVDFAEF EPNLVY

Best Arabidopsis Sequence Match ( AT3G56940.1 )
(BLAST)

001: MAAEMALVKP ISKFSSPKLS NPSKFLSGRR FSTVIRMSAS SSPPPPTTAT SKSKKGTKKE IQESLLTPRF YTTDFEEMEQ LFNTEINKNL NEAEFEALLQ
101: EFKTDYNQTH FVRNKEFKEA ADKLQGPLRQ IFVEFLERSC TAEFSGFLLY KELGRRLKKT NPVVAEIFSL MSRDEARHAG FLNKGLSDFN LALDLGFLTK
201: ARKYTFFKPK FIFYATYLSE KIGYWRYITI YRHLKENPEF QCYPIFKYFE NWCQDENRHG DFFSALMKAQ PQFLNDWQAK LWSRFFCLSV YVTMYLNDCQ
301: RTNFYEGIGL NTKEFDMHVI IETNRTTARI FPAVLDVENP EFKRKLDRMV VSYEKLLAIG ETDDASFIKT LKRIPLVTSL ASEILAAYLM PPVESGSVDF
401: AEFEPNLVY

Arabidopsis Description

CRD1Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M591]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.