Factsheet for Solyc10g077040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018519	Potato	plastid	99.5	99.5
VIT_08s0040g00390.t01	Wine grape	plastid	87.13	87.56
Bra003256.1-P	Field mustard	plastid	84.9	83.86
CDX72094	Canola	plastid	84.9	83.86
CDX67664	Canola	plastid	84.65	83.62
AT3G56940.1	Thale cress	plastid	84.41	83.37
CDY51267	Canola	plastid	84.41	83.37
KRG95003	Soybean	plastid	85.4	81.37
GSMUA_Achr10P...	Banana	plastid	81.93	81.33
Zm00001d040463_P001	Maize	plastid	81.68	81.28
GSMUA_Achr3P25050_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.69	81.09
EES02775	Sorghum	plastid	81.68	81.08
KRH66642	Soybean	plastid	84.9	80.9
Zm00001d008230_P001	Maize	mitochondrion, plastid	81.68	80.88
CDY47386	Canola	cytosol	26.98	80.15
Os01t0279100-01	Rice	plastid	80.45	79.66
TraesCS3A01G191700.4	Wheat	plastid	79.7	72.04
GSMUA_Achr8P05770_001	Banana	plastid	55.69	71.89
TraesCS3D01G194300.1	Wheat	plastid	79.7	71.4
CDX76019	Canola	cytosol	20.79	71.19
Bra014662.1-P	Field mustard	cytosol	20.79	71.19
TraesCS3B01G219700.1	Wheat	golgi, plastid	79.46	71.18
HORVU3Hr1G039930.2	Barley	plastid	78.96	70.42
Bra007284.1-P	Field mustard	cytosol	85.15	41.1
CDY27178	Canola	mitochondrion	85.15	38.22

Protein Annotations

KEGG:00860+1.14.13.81	MapMan:7.12.6.3.1	InterPro:AcsF	InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009658	GO:GO:0009706	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016491	GO:GO:0046872
GO:GO:0048529	GO:GO:0055114	GO:GO:1901401	UniProt:K4D246	HAMAP:MF_01840	PFAM:PF02915
PANTHER:PTHR31053	PANTHER:PTHR31053:SF2	InterPro:Rubrerythrin	SUPFAM:SSF47240	EnsemblPlantsGene:Solyc10g077040.1	EnsemblPlants:Solyc10g077040.1.1
TIGRFAMs:TIGR02029	UniParc:UPI000276A0A1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:59953397..59955878

Molecular Weight (calculated)

47187.9 Da

IEP (calculated)

9.249

GRAVY (calculated)

-0.322

Length

404 amino acids

Sequence
(BLAST)

001: MAAEMALVKP ITKFNTINTT TARLSSRRLP FTVRMSAATT TPPTSKPSKK PQKQGIKESL LTPRFYTTDF DEMETLFNTE INKNLNEAEF EALLQEFKTD
101: YNQTHFVRNK EFKEAADKIQ GPLRQIFVEF LERSCTAEFS GFLLYKELGR RLKKTNPVVA EIFSLMSRDE ARHAGFLNKG LSDFNLALDL GFLTKARKYT
201: FFKPKFIFYA TYLSEKIGYW RYITIYRHLK TNPKFICYPI FKYFENWCQD ENRHGDFFSA LMKAQPQFLN DWKAKLWSRF FCLSVYVTMY LNDCQRTDFY
301: EGIGLNTKEF DMHVIIETNR TTARIFPAVL DVENPEFKRK LDRMVEINTK LIAVSESDEI PLVKNFKKIP LIAALASELL AAYLMKPIES GSVDFAEFEP
401: QLTY

Best Arabidopsis Sequence Match ( AT3G56940.1 )
(BLAST)

001: MAAEMALVKP ISKFSSPKLS NPSKFLSGRR FSTVIRMSAS SSPPPPTTAT SKSKKGTKKE IQESLLTPRF YTTDFEEMEQ LFNTEINKNL NEAEFEALLQ
101: EFKTDYNQTH FVRNKEFKEA ADKLQGPLRQ IFVEFLERSC TAEFSGFLLY KELGRRLKKT NPVVAEIFSL MSRDEARHAG FLNKGLSDFN LALDLGFLTK
201: ARKYTFFKPK FIFYATYLSE KIGYWRYITI YRHLKENPEF QCYPIFKYFE NWCQDENRHG DFFSALMKAQ PQFLNDWQAK LWSRFFCLSV YVTMYLNDCQ
301: RTNFYEGIGL NTKEFDMHVI IETNRTTARI FPAVLDVENP EFKRKLDRMV VSYEKLLAIG ETDDASFIKT LKRIPLVTSL ASEILAAYLM PPVESGSVDF
401: AEFEPNLVY

Arabidopsis Description

CRD1Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M591]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.