Factsheet for Bra007284.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003256.1-P	Field mustard	plastid	47.07	96.33
AT3G56940.1	Thale cress	plastid	45.64	93.4
CDY27178	Canola	mitochondrion	100.0	93.0
Bra014662.1-P	Field mustard	cytosol	12.31	87.29
VIT_08s0040g00390.t01	Wine grape	plastid	41.7	86.82
PGSC0003DMT400018519	Potato	plastid	41.22	85.4
Solyc10g077040.1.1	Tomato	plastid	41.1	85.15
GSMUA_Achr10P...	Banana	plastid	40.5	83.29
KRG95003	Soybean	plastid	41.94	82.78
KRH66642	Soybean	plastid	41.46	81.84
GSMUA_Achr3P25050_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	38.83	80.85
EES02775	Sorghum	plastid	39.31	80.84
Zm00001d040463_P001	Maize	plastid	39.19	80.79
Os01t0279100-01	Rice	plastid	39.07	80.15
Zm00001d008230_P001	Maize	mitochondrion, plastid	39.07	80.15
TraesCS3D01G194300.1	Wheat	plastid	39.43	73.17
TraesCS3A01G191700.4	Wheat	plastid	38.95	72.93
TraesCS3B01G219700.1	Wheat	golgi, plastid	39.19	72.73
HORVU3Hr1G039930.2	Barley	plastid	38.71	71.52
GSMUA_Achr8P05770_001	Banana	plastid	26.4	70.61

Protein Annotations

KEGG:00860+1.14.13.81	MapMan:7.12.6.3.1	InterPro:AcsF	EnsemblPlantsGene:Bra007284	EnsemblPlants:Bra007284.1	EnsemblPlants:Bra007284.1-P
InterPro:Ferritin-like_SF	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016740	GO:GO:0016746	GO:GO:0019706	GO:GO:0046872
GO:GO:0048529	GO:GO:0055114	UniProt:M4CSU2	HAMAP:MF_01840	PFAM:PF01529	PFAM:PF02915
PFscan:PS50216	PANTHER:PTHR31053	PANTHER:PTHR31053:SF2	InterPro:Palmitoyltrfase_DHHC	InterPro:Rubrerythrin	SUPFAM:SSF47240
TIGRFAMs:TIGR02029	TMHMM:TMhelix	UniParc:UPI0002542C18	SEG:seg	:	:

Description

AT3G56940 (E=4e-212) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase

Coordinates

chrA09:+:28362680..28368058

Molecular Weight (calculated)

96758.0 Da

IEP (calculated)

6.691

GRAVY (calculated)

-0.459

Length

837 amino acids

Sequence
(BLAST)

001: MAWNETKLKR LYQVWRGSND IFFLFMTSGR DPGIVPRSLK PPESDDVPDS TTPSMEWVSG RTPNIRLPRV KDVKVNGHTV KVKFCDTCLL YRPPRASHCS
101: ICNNCVQRFD HHCPWVGQCI GLRNYRFFFM FISTSTTLCI YVFAFSWMNI FQRHMDERIS IWKAISEDVL SDILIVYCFI TVWFVGGLTI FHSYLICTNQ
201: TTYENFRYRY DKKENPYNKG VLGNIWEIFL SKIPPSMNKF RSFVKEEDYM MVETPTSNPG QSLVNSKEKI DIEMGGGRVV DEGRKSYSLP ELLRNLNYED
301: LEDDCEEDDL KSKDHHHHHH HDQNEAIIPP FDPFFTSESG VNKDQREGQE SRGSSSDDDG FAGKRVGVSS DDEEKNEGYE QKWSAGSVYT NARSEDGTSS
401: PQSTSPMLPS PSSSSSLLSL STASETLTMA AEMMLVKPIS KFASPKLSNA RTCLTNRRFS TVIRMSATST PPPPATATSK SKKGTKKEIQ ESLLTPRFYT
501: TDFEEMEQLF NTEINKNLNE EEFIALLQEF KTDYNQTHFV RNKEFKEAAD KLQGPLRQIF VEFLERSCTA EFSGFLLYKE LGRRLKKTNP VVAEIFSLMS
601: RDEARHAGFL NKGLSDFNLA LDLGFLTKAR KYTFFKPKFI FYATYLSEKI GYWRYITIYR HLKQNPEFQC YPIFKYFENW CQDENRHGDF FSALMKAQPQ
701: FLNDWQAKLW SRFFCLSVYV TMYLNDCQRT DFYEGIGLNT KEFDMHVIIE TNRTTARIFP AVLDVENPEF KRKLDRMVVI NEKLMAVGQT DDPSFVKNLK
801: RIPLIAGLVS EILAAYLMPP VESGSVDFAE FEPNLVY

Best Arabidopsis Sequence Match ( AT3G56940.1 )
(BLAST)

001: MAAEMALVKP ISKFSSPKLS NPSKFLSGRR FSTVIRMSAS SSPPPPTTAT SKSKKGTKKE IQESLLTPRF YTTDFEEMEQ LFNTEINKNL NEAEFEALLQ
101: EFKTDYNQTH FVRNKEFKEA ADKLQGPLRQ IFVEFLERSC TAEFSGFLLY KELGRRLKKT NPVVAEIFSL MSRDEARHAG FLNKGLSDFN LALDLGFLTK
201: ARKYTFFKPK FIFYATYLSE KIGYWRYITI YRHLKENPEF QCYPIFKYFE NWCQDENRHG DFFSALMKAQ PQFLNDWQAK LWSRFFCLSV YVTMYLNDCQ
301: RTNFYEGIGL NTKEFDMHVI IETNRTTARI FPAVLDVENP EFKRKLDRMV VSYEKLLAIG ETDDASFIKT LKRIPLVTSL ASEILAAYLM PPVESGSVDF
401: AEFEPNLVY

Arabidopsis Description

CRD1Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M591]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.