Factsheet for Bra015908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003256.1-P
Bra007284.1-P
Bra014662.1-P
Bra019049.1-P
Bra030540.1-P
Bra033415.1-P
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	Bra030540.1-P	AT1G03630.1	22212719
AT1G74470.1	Bra033415.1-P	AT1G03630.1	22212719
AT1G74470.1	Bra034407.1-P	AT1G35670.1	19130088
AT1G74470.1	Bra003256.1-P	AT3G56940.1	22212719
AT1G74470.1	Bra007284.1-P	AT3G56940.1	22212719
AT1G74470.1	Bra014662.1-P	AT3G56940.1	22212719
AT1G74470.1	Bra019049.1-P	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96548	Canola	plastid	99.36	99.36
CDX73093	Canola	plastid	98.28	98.28
Bra008152.1-P	Field mustard	plastid	96.57	96.57
AT1G74470.1	Thale cress	plastid	93.56	93.36
PGSC0003DMT400050234	Potato	plastid	80.9	81.25
KRH03484	Soybean	plastid	80.47	81.17
KRH56906	Soybean	plastid	80.26	80.95
Solyc03g115980.1.1	Tomato	plastid	80.47	80.82
VIT_17s0000g06280.t01	Wine grape	plastid	80.69	80.51
Zm00001d018034_P001	Maize	plastid	71.89	73.3
EES07263	Sorghum	plastid	71.67	73.09
GSMUA_Achr8P24130_001	Banana	plastid	70.82	72.53
HORVU6Hr1G075900.1	Barley	plastid	71.89	72.51
TraesCS6A01G307700.1	Wheat	plastid	71.67	72.29
TraesCS6B01G336300.1	Wheat	plastid	71.67	72.29
TraesCS6D01G286900.1	Wheat	plastid	71.67	72.29
Os02t0744900-01	Rice	plastid	70.6	71.06

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	ProteinID:ABI63587	ProteinID:ABI63587.1	InterPro:BchP_ChlP_pln/prok
EnsemblPlantsGene:Bra015908	EnsemblPlants:Bra015908.1	EnsemblPlants:Bra015908.1-P	EMBL:DQ886527	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015979	GO:GO:0015995	GO:GO:0016491	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188
GO:GO:0055114	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	UniProt:M4DHD1	PFAM:PF07992
PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028
TIGRFAMs:TIGR02032	UniParc:UPI0002541E7F	SEG:seg	:	:	:

Description

AT1G74470 (E=1e-235) | geranylgeranyl reductase

Coordinates

chrA07:+:20272604..20274593

Molecular Weight (calculated)

51743.3 Da

IEP (calculated)

9.229

GRAVY (calculated)

-0.348

Length

466 amino acids

Sequence
(BLAST)

001: MATFALKSFT GLRQSPTDQI TFVSNVPSSL SRSQRRTSLK VTASRASPKL ANRSLRVAVI GGGPAGGAAA ETLAQGGIET ILIERKMDNC KPCGGAIPLC
101: MVGEFNLPLD IIDRRVTKMK MISPSNIAVD IGRTLKEHEY IGMARREVLD QYLRERAEKS GATVINGLFL KMDLPENWDS PYVLHYTEYD GKTEATGQKK
201: TMEVDAVIGA DGANSRVAKS IGAGDYDYAI AFQERIRIPD DKMTYYEDLA EMYVGDDVSP DFYGWVFPKC DHVAVGTGTV THKGDIKKFQ LATRNRAKDK
301: ILGGKIIRVE AHPIPEHPRP RRLSKRVALV GDAAGYVTKC SGEGIYFAAK SGRMCAEAIV EGSQNGKKMI DESDLRKYLE KWDKTYLPTY RVLDVLQKVF
401: YRSNPAREAF VEMCGDEYVQ KMTFDSYLYK RVAPGSPLED LKLAVNTIGS VFRANALRRE IEKLNV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.