CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRG95003
KRH26074
KRH27209
KRH34983
KRH34984
KRH55334
KRH66642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	KRH26074	AT1G03630.1	22212719
AT1G74470.1	KRH27209	AT1G03630.1	22212719
AT1G74470.1	KRH55334	AT1G03630.1	22212719
AT1G74470.1	KRG91803	AT1G35670.1	19130088
AT1G74470.1	KRH34983	AT1G35670.1	19130088
AT1G74470.1	KRH34984	AT1G35670.1	19130088
AT1G74470.1	KRG95003	AT3G56940.1	22212719
AT1G74470.1	KRH66642	AT3G56940.1	22212719
AT1G74470.1	KRH26074	AT4G27440.1	22212719
AT1G74470.1	KRH27209	AT4G27440.1	22212719
AT1G74470.1	KRH55334	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56906	Soybean	plastid	98.27	98.27
PGSC0003DMT400050234	Potato	plastid	87.23	86.85
Solyc03g115980.1.1	Tomato	plastid	87.01	86.64
VIT_17s0000g06280.t01	Wine grape	plastid	86.58	85.65
CDY65895	Canola	plastid	80.95	83.48
CDX73093	Canola	plastid	81.82	81.12
CDY42418	Canola	plastid	81.82	81.12
AT1G74470.1	Thale cress	plastid	81.82	80.94
Bra008152.1-P	Field mustard	plastid	81.6	80.9
CDX96548	Canola	plastid	81.6	80.9
Bra015908.1-P	Field mustard	plastid	81.17	80.47
Zm00001d018034_P001	Maize	plastid	76.62	77.46
EES07263	Sorghum	plastid	76.41	77.24
GSMUA_Achr8P24130_001	Banana	plastid	74.46	75.6
HORVU6Hr1G075900.1	Barley	plastid	75.11	75.11
TraesCS6A01G307700.1	Wheat	plastid	75.11	75.11
TraesCS6B01G336300.1	Wheat	plastid	75.11	75.11
TraesCS6D01G286900.1	Wheat	plastid	75.11	75.11
Os02t0744900-01	Rice	plastid	75.11	74.95
KRH73442	Soybean	plastid	58.44	60.27

Protein Annotations

KEGG:00900+1.3.1.83	EntrezGene:100814603	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	UniProt:A0A0R0FAD6	EMBL:ACUP02010348
InterPro:BchP_ChlP_pln/prok	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EnsemblPlantsGene:GLYMA_17G100700	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995
GO:GO:0016491	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	InterPro:Geranylgeranyl_Rdtase_fam
InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	EnsemblPlants:KRH03484	ProteinID:KRH03484	ProteinID:KRH03484.1	PFAM:PF07992
PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028
TIGRFAMs:TIGR02032	UniParc:UPI0001D16380	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:7921514..7924660

Molecular Weight (calculated)

51259.8 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.348

Length

462 amino acids

Sequence
(BLAST)

001: MNSIAFKSFV GLRQSSPEAP HFAAQSRPAT PHRKFRVVAG KFSPRLNGRN LRVAVVGGGP AGGAAAETLA KGGVETFLIE RKMDNCKPCG GAIPLCMVGE
101: FDLPLDIIDR RVTKMKMISP SNVAVDIGRT LKPHEYIGMV RREVLDAYLR DRAKENGANV INGLFLKMDI PKDNNSPYVL HYSSYDGKTN GAGEKRTLEV
201: DAVIGADGAN SRVAKSIDAG DYEYAIAFQE RVRIPDDKMV YYENLAEMYV GDDVSPDFYG WVFPKCDHVA VGTGTVTHKG DIKKFQLATR KRAEDKILGG
301: KIIRVEAHPI PEHPRPRRLS GRVALVGDAA GYVTKCSGEG IYFAAKSGRM CAEAIVEGSE NGKRMVEEGD LRKYLEKWDK TYWPTYKVLD ILQKVFYRSN
401: PAREAFVEMC ADEYVQKMTF DSYLYKTVVP GNPLEDLKLA INTIGSLVRA NAIRREMKKL NV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.