Factsheet for Zm00001d018034_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001820_P001
Zm00001d004812_P002
Zm00001d008230_P001
Zm00001d013937_P001
Zm00001d023560_P002
Zm00001d032576_P001
Zm00001d040463_P001
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	Zm00001d001820_P001	AT1G03630.1	22212719
AT1G74470.1	Zm00001d013937_P001	AT1G03630.1	22212719
AT1G74470.1	Zm00001d032576_P001	AT1G03630.1	22212719
AT1G74470.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT1G74470.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT1G74470.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT1G74470.1	Zm00001d008230_P001	AT3G56940.1	22212719
AT1G74470.1	Zm00001d040463_P001	AT3G56940.1	22212719
AT1G74470.1	Zm00001d001820_P001	AT4G27440.1	22212719
AT1G74470.1	Zm00001d013937_P001	AT4G27440.1	22212719
AT1G74470.1	Zm00001d032576_P001	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07263	Sorghum	plastid	99.12	99.12
Os02t0744900-01	Rice	plastid	90.81	89.63
TraesCS6D01G286900.1	Wheat	plastid	89.72	88.74
TraesCS6B01G336300.1	Wheat	plastid	89.72	88.74
TraesCS6A01G307700.1	Wheat	plastid	89.72	88.74
HORVU6Hr1G075900.1	Barley	plastid	89.28	88.31
KRH56906	Soybean	plastid	77.9	77.06
KRH03484	Soybean	plastid	77.46	76.62
GSMUA_Achr8P24130_001	Banana	plastid	76.15	76.48
PGSC0003DMT400050234	Potato	plastid	75.71	74.57
Solyc03g115980.1.1	Tomato	plastid	75.49	74.35
VIT_17s0000g06280.t01	Wine grape	plastid	75.71	74.09
CDY65895	Canola	plastid	71.99	73.44
CDX73093	Canola	plastid	73.96	72.53
CDX96548	Canola	plastid	73.74	72.32
AT1G74470.1	Thale cress	plastid	73.74	72.16
CDY42418	Canola	plastid	73.3	71.89
Bra015908.1-P	Field mustard	plastid	73.3	71.89
Bra008152.1-P	Field mustard	plastid	73.09	71.67
Zm00001d040356_P001	Maize	mitochondrion, plastid	54.27	55.73

Protein Annotations

KEGG:00900+1.3.1.83	EntrezGene:100283007	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	ProteinID:AQK74862.1	UniProt:B6TDR5
EMBL:BT065975	InterPro:BchP_ChlP_pln/prok	EMBL:EU963130	InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016020	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114
GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	PFAM:PF01494	PRINTS:PR00420
PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032
UniParc:UPI000182C3E1	EnsemblPlantsGene:Zm00001d018034	EnsemblPlants:Zm00001d018034_P001	EnsemblPlants:Zm00001d018034_T001	SEG:seg	:

Description

geranylgeranyl hydrogenase1 geranylgeranyl hydrogenase1

Coordinates

chr5:+:212543656..212546035

Molecular Weight (calculated)

49984.2 Da

IEP (calculated)

9.343

GRAVY (calculated)

-0.249

Length

457 amino acids

Sequence
(BLAST)

001: MTSLSSAVAL PSSCRARPAG GSRRARMVVT RAAASSPKLP NGRRLRVAVV GGGPAGGAAA EALAKGGVET VLIERKMDNC KPCGGAIPLC MVSEFDLPLD
101: LVDRKVRKMK MISPSNVAVD IGRTLAPHEY IGMVRREVLD AYLRSRAQSV GAEVVNGLFL RYEAPKEPNG SYVVHYNHYD GSNGKVGGEK RSFEVDAIVG
201: ADGANSRVAK DMGAGDYEYA IAFQERVKIP DDKMVYYEER AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKADIKKF QAATRLRAKD KIEGGKIIRV
301: EAHPIPEHPR PKRVSGRVTL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VAGSANGTRM VEESDLRKYL AEFDRLYWPT YKVLDILQKV FYRSNAAREA
401: FVEMCADDYV QKMTFDSYLY KRVVPGNPLD DIKLAVNTIG SLVRATALRR EMEKVTL

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.