CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67664
CDX72094
CDX73342
CDX76019
CDX89877
CDX92832
CDY15470
CDY18175
CDY27178
CDY29840
CDY37101
CDY47386
CDY51267
CDY51384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	CDX89877	AT1G03630.1	22212719
AT1G74470.1	CDY15470	AT1G03630.1	22212719
AT1G74470.1	CDY18175	AT1G03630.1	22212719
AT1G74470.1	CDY51384	AT1G03630.1	22212719
AT1G74470.1	CDX73342	AT1G35670.1	19130088
AT1G74470.1	CDY37101	AT1G35670.1	19130088
AT1G74470.1	CDX67664	AT3G56940.1	22212719
AT1G74470.1	CDX72094	AT3G56940.1	22212719
AT1G74470.1	CDX76019	AT3G56940.1	22212719
AT1G74470.1	CDY27178	AT3G56940.1	22212719
AT1G74470.1	CDY47386	AT3G56940.1	22212719
AT1G74470.1	CDY51267	AT3G56940.1	22212719
AT1G74470.1	CDX92832	AT4G27440.1	22212719
AT1G74470.1	CDY29840	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42418	Canola	plastid	97.77	93.99
Bra008152.1-P	Field mustard	plastid	96.88	93.13
CDX73093	Canola	plastid	96.43	92.7
CDX96548	Canola	plastid	96.43	92.7
AT1G74470.1	Thale cress	plastid	93.08	89.29
KRH03484	Soybean	plastid	83.48	80.95
VIT_17s0000g06280.t01	Wine grape	plastid	83.93	80.51
KRH56906	Soybean	plastid	82.81	80.3
Solyc03g115980.1.1	Tomato	plastid	82.59	79.74
PGSC0003DMT400050234	Potato	plastid	82.37	79.53
Zm00001d018034_P001	Maize	plastid	73.44	71.99
EES07263	Sorghum	plastid	73.21	71.77
GSMUA_Achr8P24130_001	Banana	plastid	72.77	71.65
HORVU6Hr1G075900.1	Barley	plastid	73.66	71.43
TraesCS6A01G307700.1	Wheat	plastid	73.44	71.21
TraesCS6B01G336300.1	Wheat	plastid	73.44	71.21
TraesCS6D01G286900.1	Wheat	plastid	73.44	71.21
Os02t0744900-01	Rice	plastid	72.54	70.19

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	GO:A0A078JHC2	UniProt:A0A078JHC2	InterPro:BchP_ChlP_pln/prok
EnsemblPlants:CDY65895	ProteinID:CDY65895	ProteinID:CDY65895.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016491	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00050963001	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00420
PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032
UniPathway:UPA00668	UniParc:UPI0004EE5780	SEG:seg	:	:	:

Description

BnaCnng49000DBnaCnng49000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHC2]

Coordinates

chrLK034991:+:11004..12954

Molecular Weight (calculated)

49766.9 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.339

Length

448 amino acids

Sequence
(BLAST)

001: MATFTLKSFT GLRQSSPDQT SFVSHVPASP NLANRKLRVA VIGGGPAGGA AAETLAQGGI ETILIERKMD NCKPCGGAIP LCMVGEFNLP LDIIDRRVTK
101: MKMISPSNIS VDIGRTLKEH EYIGMVRREV LDQYLRERAE KSGATVINGL FLKMDLPENW DTPYVLHYTE YDGKTGATGQ KKTMEVDAVI GADGANSRVA
201: KSIGAGDYDY AIAFQERIRI PDDKMTYYED LAEMYVGDDV SPDFYGWVFP KCDHVAVGTG TVTHKGDIKK FQLATRNRAK DKILGGKIIR VEAHPIPEHP
301: RPRRLSKRVA LVGDAAGYVT KCSGEGIYFA AKSGRMCAEA IVEGSQNGKK MIDESDLRKY LEKWDKTYLP TYRVLDVLQK VFYRSNPARE AFVEMCGDEY
401: VQKMTFDSYL YKRVAPGSPL EDLKLAVNTI GSVFRANALR REIEKLNV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.