Factsheet for PGSC0003DMT400050234

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400018519
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400064369
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	PGSC0003DMT400039734	AT1G03630.1	22212719
AT1G74470.1	PGSC0003DMT400047264	AT1G03630.1	22212719
AT1G74470.1	PGSC0003DMT400064369	AT1G03630.1	22212719
AT1G74470.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT1G74470.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT1G74470.1	PGSC0003DMT400018519	AT3G56940.1	22212719
AT1G74470.1	PGSC0003DMT400039734	AT4G27440.1	22212719
AT1G74470.1	PGSC0003DMT400047264	AT4G27440.1	22212719
AT1G74470.1	PGSC0003DMT400064369	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115980.1.1	Tomato	plastid	98.71	98.71
KRH03484	Soybean	plastid	86.85	87.23
KRH56906	Soybean	plastid	86.42	86.8
VIT_17s0000g06280.t01	Wine grape	plastid	86.42	85.87
CDY65895	Canola	plastid	79.53	82.37
CDX73093	Canola	plastid	81.68	81.33
Bra008152.1-P	Field mustard	plastid	81.47	81.12
CDY42418	Canola	plastid	81.25	80.9
CDX96548	Canola	plastid	81.25	80.9
Bra015908.1-P	Field mustard	plastid	81.25	80.9
AT1G74470.1	Thale cress	plastid	80.6	80.09
EES07263	Sorghum	plastid	75.0	76.15
Zm00001d018034_P001	Maize	plastid	74.57	75.71
HORVU6Hr1G075900.1	Barley	plastid	75.22	75.54
TraesCS6A01G307700.1	Wheat	plastid	75.22	75.54
TraesCS6B01G336300.1	Wheat	plastid	75.22	75.54
TraesCS6D01G286900.1	Wheat	plastid	75.22	75.54
Os02t0744900-01	Rice	plastid	75.22	75.38
GSMUA_Achr8P24130_001	Banana	plastid	73.49	74.95
PGSC0003DMT400017587	Potato	plastid	25.43	51.53

Protein Annotations

KEGG:00900+1.3.1.83	EntrezGene:102598599	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	ProteinID:AFW90626	ProteinID:AFW90626.1
InterPro:BchP_ChlP_pln/prok	InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016020
GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam
InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	EMBL:JX576270	UniProt:M1BPZ4	PFAM:PF01494	EnsemblPlantsGene:PGSC0003DMG400019510
PGSC:PGSC0003DMG400019510	EnsemblPlants:PGSC0003DMT400050234	PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	SUPFAM:SSF51905
TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI0002957DF1	RefSeq:XP_006364592.1	SEG:seg

Description

Geranylgeranyl diphosphate reductase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400019510]

Coordinates

chr3:+:55804950..55806678

Molecular Weight (calculated)

51235.7 Da

IEP (calculated)

9.245

GRAVY (calculated)

-0.316

Length

464 amino acids

Sequence
(BLAST)

001: MASIALKTFI GLRQSSPGNN SINFSKSLPT SQTHRRLRIN ASKSSPRVTG RNLRVAVVGG GPAGGAAAET LAKGGIETFL IERKMDNCKP CGGAIPLCMV
101: GEFDLPLDII DRKVTKMKMI SPSNVAVDIG QTLKPHEYIG MVRREVLDAY LRDRAAEAGA SVLNGLFLRM DMPKAPNSPY VLHYTSYDSK TNGAGEKCTL
201: EVDAVIGADG ANSRVAKSIN AGDYEYAIAF QERIRISDDK MKYYENLAEM YVGDDVSPDF YGWVFPKCDH VAVGTGTVTH KADIKKFQLA TRLRADSKIT
301: GGKIIRVEAH PIPEHPRPRR LQDRVALVGD AAGYVTKCSG EGIYFAAKSG RMCAEAIVEG SENGKRMVDE SDLRKYLEKW DKTYWPTYKV LDILQKVFYR
401: SNPAREAFVE MCADEYVQKM TFDSYLYKKV APGNPIEDLK LAVNTIGSLV RANALRREMD KLSV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.