Factsheet for GSMUA_Achr8P24130_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P08110_001
GSMUA_Achr3P14270_001
GSMUA_Achr3P25050_001
GSMUA_Achr6P25560_001
GSMUA_Achr7P04280_001
GSMUA_Achr8P05770_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	GSMUA_Achr11P...	AT1G03630.1	22212719
AT1G74470.1	GSMUA_Achr3P14270_001	AT1G03630.1	22212719
AT1G74470.1	GSMUA_Achr7P04280_001	AT1G03630.1	22212719
AT1G74470.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G74470.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G74470.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G74470.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT1G74470.1	GSMUA_Achr10P...	AT3G56940.1	22212719
AT1G74470.1	GSMUA_Achr3P25050_001	AT3G56940.1	22212719
AT1G74470.1	GSMUA_Achr8P05770_001	AT3G56940.1	22212719
AT1G74470.1	GSMUA_Achr11P...	AT4G27440.1	22212719
AT1G74470.1	GSMUA_Achr3P14270_001	AT4G27440.1	22212719
AT1G74470.1	GSMUA_Achr7P04280_001	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07263	Sorghum	plastid	76.7	76.37
Zm00001d018034_P001	Maize	plastid	76.48	76.15
Os02t0744900-01	Rice	plastid	75.82	74.51
KRH03484	Soybean	plastid	75.6	74.46
TraesCS6D01G286900.1	Wheat	plastid	75.6	74.46
TraesCS6B01G336300.1	Wheat	plastid	75.6	74.46
TraesCS6A01G307700.1	Wheat	plastid	75.6	74.46
HORVU6Hr1G075900.1	Barley	plastid	75.38	74.24
KRH56906	Soybean	plastid	75.38	74.24
VIT_17s0000g06280.t01	Wine grape	plastid	76.04	74.09
PGSC0003DMT400050234	Potato	plastid	74.95	73.49
Solyc03g115980.1.1	Tomato	plastid	74.73	73.28
CDY65895	Canola	plastid	71.65	72.77
AT1G74470.1	Thale cress	plastid	73.85	71.95
CDY42418	Canola	plastid	73.19	71.46
CDX96548	Canola	plastid	72.97	71.24
CDX73093	Canola	plastid	72.97	71.24
Bra008152.1-P	Field mustard	plastid	72.97	71.24
Bra015908.1-P	Field mustard	plastid	72.53	70.82
GSMUA_Achr6P32200_001	Banana	plastid	53.85	52.58

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	InterPro:BchP_ChlP_pln/prok	InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0009987
GO:GO:0015979	GO:GO:0015995	GO:GO:0016020	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114
GO:GO:0071949	EnsemblPlantsGene:GSMUA_Achr8G24130_001	EnsemblPlants:GSMUA_Achr8P24130_001	EnsemblPlants:GSMUA_Achr8T24130_001	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188
UniProt:M0TT66	PFAM:PF01494	PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	SUPFAM:SSF51905
TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	UniParc:UPI0002963904	SEG:seg	:	:

Description

Geranylgeranyl diphosphate reductase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G24130_001]

Coordinates

chr8:+:28414943..28416645

Molecular Weight (calculated)

49984.4 Da

IEP (calculated)

9.390

GRAVY (calculated)

-0.275

Length

455 amino acids

Sequence
(BLAST)

001: MASLSTTTST AAGESLRSFA GLRRETRILR GVAAADAPGS QLRRRQLGVV RASRTSPRLN GRKLRVAVVG GGPAGGSAAE ALAKGGVETM LIERKLDNCK
101: PCGGAIPLCM VEEFGLPLDL IDRRVTKMKM ISPSNVAVDI GRTLGPDEYI GMVRREVLDA YLRERAAEAG ASVINGLFLR LEQPEGPGGP YRIHYNEFSP
201: AGGGAGERRT AEVDAVYAIA FQERVRIPET KMEYYKERAE MYVGDDVSPD FYGWVFPKCD HVAVGTGTVT HKADIKKFQA ATRLRAKDKI EGGTIIRVEA
301: HPIPEHPRPR RVLGRVALVG DAAGYVTKCS GEGIYFAAKS GRMCAEAIVE GSENGSRMID EGDLRKYLEK FDKMYWPTYK VLDVLQKLFY RSNAAREAFV
401: EMCADEYVQK MTFDSYLYKK VVPGNPLDDI KLAVNTIGSL VRATALRREM EKLTL

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.