CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67664
CDX72094
CDX73342
CDX76019
CDX89877
CDX92832
CDY15470
CDY18175
CDY27178
CDY29840
CDY37101
CDY47386
CDY51267
CDY51384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	CDX89877	AT1G03630.1	22212719
AT1G74470.1	CDY15470	AT1G03630.1	22212719
AT1G74470.1	CDY18175	AT1G03630.1	22212719
AT1G74470.1	CDY51384	AT1G03630.1	22212719
AT1G74470.1	CDX73342	AT1G35670.1	19130088
AT1G74470.1	CDY37101	AT1G35670.1	19130088
AT1G74470.1	CDX67664	AT3G56940.1	22212719
AT1G74470.1	CDX72094	AT3G56940.1	22212719
AT1G74470.1	CDX76019	AT3G56940.1	22212719
AT1G74470.1	CDY27178	AT3G56940.1	22212719
AT1G74470.1	CDY47386	AT3G56940.1	22212719
AT1G74470.1	CDY51267	AT3G56940.1	22212719
AT1G74470.1	CDX92832	AT4G27440.1	22212719
AT1G74470.1	CDY29840	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96548	Canola	plastid	98.93	98.93
Bra015908.1-P	Field mustard	plastid	98.28	98.28
CDY42418	Canola	plastid	97.64	97.64
CDY65895	Canola	plastid	92.7	96.43
AT1G74470.1	Thale cress	plastid	93.99	93.79
KRH03484	Soybean	plastid	81.12	81.82
PGSC0003DMT400050234	Potato	plastid	81.33	81.68
KRH56906	Soybean	plastid	80.9	81.6
Solyc03g115980.1.1	Tomato	plastid	81.12	81.47
VIT_17s0000g06280.t01	Wine grape	plastid	81.12	80.94
Zm00001d018034_P001	Maize	plastid	72.53	73.96
EES07263	Sorghum	plastid	72.32	73.74
GSMUA_Achr8P24130_001	Banana	plastid	71.24	72.97
HORVU6Hr1G075900.1	Barley	plastid	72.32	72.94
TraesCS6A01G307700.1	Wheat	plastid	72.1	72.73
TraesCS6B01G336300.1	Wheat	plastid	72.1	72.73
TraesCS6D01G286900.1	Wheat	plastid	72.1	72.73
Os02t0744900-01	Rice	plastid	71.46	71.92

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	GO:A0A078CDT4	InterPro:BchP_ChlP_pln/prok	EnsemblPlants:CDX73093
ProteinID:CDX73093	ProteinID:CDX73093.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995
GO:GO:0016491	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00103556001
InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00420	PANTHER:PTHR42685
PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniPathway:UPA00668
UniParc:UPI0004EDB3DC	SEG:seg	:	:	:	:

Description

BnaC06g35410D

Coordinates

chrLK031797:+:2048828..2050985

Molecular Weight (calculated)

51767.4 Da

IEP (calculated)

9.229

GRAVY (calculated)

-0.346

Length

466 amino acids

Sequence
(BLAST)

001: MATFALKSFT GLRQSSPDQI NFVSHVPSSL SRSQRRTSLK VTASRASPKL ANRSLRVAVI GGGPAGGAAA ETLAQGGIET ILIERKMDNC KPCGGAIPLC
101: MVGEFNLPLD IIDRRVTKMK MISPSNIAVD IGRTLKEHEY IGMVRREVLD QYLRERAEKS GATVINGLFL KMDLPEEWDS PYVLHYTEYD GKTGATGQKK
201: TMEVDAVIGA DGANSRVAKS IGAGDYDYAI AFQERIRIPD DKMTYYEDLA EMYVGDDVSP DFYGWVFPKC DHVAVGTGTV THKGDIKKFQ LATRNRAKDK
301: ILGGKIIRVE AHPIPEHPRP RRLSKRVALV GDAAGYVTKC SGEGIYFAAK SGRMCAEAIV EGSQNGKKMI DESDLRKYLE KWDKTYLPTY RVLDVLQKVF
401: YRSNQAREAF VEMCGDEYVQ KMTFDSYLYK RVAPGSPLED LKLAVNTIGS VFRANALRRE IEKLNV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.