Factsheet for Os02t0744900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0279100-01
Os04t0678700-01
Os10t0496900-02
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	Os04t0678700-01	AT1G03630.1	22212719
AT1G74470.1	Os10t0496900-02	AT1G03630.1	22212719
AT1G74470.1	Os11t0171500-01	AT1G35670.1	19130088
AT1G74470.1	Os12t0169800-00	AT1G35670.1	19130088
AT1G74470.1	Os01t0279100-01	AT3G56940.1	22212719
AT1G74470.1	Os04t0678700-01	AT4G27440.1	22212719
AT1G74470.1	Os10t0496900-02	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07263	Sorghum	plastid	89.85	91.03
Zm00001d018034_P001	Maize	plastid	89.63	90.81
TraesCS6D01G286900.1	Wheat	plastid	90.28	90.48
TraesCS6B01G336300.1	Wheat	plastid	90.28	90.48
TraesCS6A01G307700.1	Wheat	plastid	90.06	90.26
HORVU6Hr1G075900.1	Barley	plastid	89.63	89.83
GSMUA_Achr8P24130_001	Banana	plastid	74.51	75.82
KRH56906	Soybean	plastid	75.38	75.54
PGSC0003DMT400050234	Potato	plastid	75.38	75.22
KRH03484	Soybean	plastid	74.95	75.11
Solyc03g115980.1.1	Tomato	plastid	74.95	74.78
VIT_17s0000g06280.t01	Wine grape	plastid	75.16	74.52
CDY65895	Canola	plastid	70.19	72.54
CDX73093	Canola	plastid	71.92	71.46
CDX96548	Canola	plastid	71.49	71.03
AT1G74470.1	Thale cress	plastid	71.49	70.88
CDY42418	Canola	plastid	71.27	70.82
Bra015908.1-P	Field mustard	plastid	71.06	70.6
Bra008152.1-P	Field mustard	plastid	71.06	70.6
Os01t0265000-00	Rice	plastid	52.92	53.61

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	EntrezGene:4330711	MapMan:7.12.6.6.3	EMBL:AK061968	ProteinID:BAD15541.1
ProteinID:BAD16125.1	ProteinID:BAF10020.2	ProteinID:BAS80895.1	InterPro:BchP_ChlP_pln/prok	ProteinID:EAZ24599.1	InterPro:FAD-bd
InterPro:FAD/NAD-bd_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941
GO:GO:0009987	GO:GO:0010189	GO:GO:0015979	GO:GO:0015995	GO:GO:0016020	GO:GO:0016491
GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	GO:GO:0071949	GO:GO:0102067
InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	EMBL:KF305678	EnsemblPlantsGene:Os02g0744900	EnsemblPlants:Os02t0744900-01
PFAM:PF01494	PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	UniProt:Q6Z2T6	SUPFAM:SSF51905
TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniProt:U5LY03	UniParc:UPI0000358AA6	RefSeq:XP_015627112.1
SEG:seg	:	:	:	:	:

Description

LIGHT-INDUCED YELLOW LEAF 1Similar to Geranylgeranyl reductase (Fragment). (Os02t0744900-01)

Coordinates

chr2:+:31246225..31248801

Molecular Weight (calculated)

50589.9 Da

IEP (calculated)

9.429

GRAVY (calculated)

-0.259

Length

463 amino acids

Sequence
(BLAST)

001: MTSLSSSAAA ARATFVMPSS VRGGMSRGRR MARLVTRAAA SSPKLPSGRR LRVAVVGGGP AGGAAAEALA KGGVETVLIE RKLDNCKPCG GAIPLCMVSE
101: FDLPLDLVDR KVRKMKMISP SNVAVDIGGT LAPHEYIGMV RREVLDAYLR SRAEGAGAEV VNGLFLRYEA PKEPNGSYVV HYNHYDSSNG KAGGEKRTFE
201: VDAIVGADGA NSRVAKDMGA GDYEYAIAFQ ERVKIPDDKM KYYEERAEMY VGDDVSPDFY GWVFPKCDHV AVGTGTVTHK PDIKKFQAAT RLRAKDRIEG
301: GKIIRVEAHP IPEHPRPKRV AGRVTLVGDA AGYVTKCSGE GIYFAAKSGR MCAEAIVAGS ANGTRMVEES DLRRYLAEFD RLYWPTYKVL DVLQKVFYRS
401: NAAREAFVEM CADDYVQRMT FDSYLYKRVV PGNPLDDIKL AVNTIGSLVR ATALRREMEK VTL

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.