Factsheet for Solyc03g115980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc07g054210.2.1
Solyc10g006900.2.1
Solyc10g077040.1.1
Solyc11g018610.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	Solyc07g054210.2.1	AT1G03630.1	22212719
AT1G74470.1	Solyc10g006900.2.1	AT1G03630.1	22212719
AT1G74470.1	Solyc12g013710.1.1	AT1G03630.1	22212719
AT1G74470.1	Solyc06g065380.2.1	AT1G35670.1	19130088
AT1G74470.1	Solyc11g018610.1.1	AT1G35670.1	19130088
AT1G74470.1	Solyc10g077040.1.1	AT3G56940.1	22212719
AT1G74470.1	Solyc07g054210.2.1	AT4G27440.1	22212719
AT1G74470.1	Solyc10g006900.2.1	AT4G27440.1	22212719
AT1G74470.1	Solyc12g013710.1.1	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050234	Potato	plastid	98.71	98.71
KRH03484	Soybean	plastid	86.64	87.01
KRH56906	Soybean	plastid	86.21	86.58
VIT_17s0000g06280.t01	Wine grape	plastid	86.21	85.65
CDY65895	Canola	plastid	79.74	82.59
Bra008152.1-P	Field mustard	plastid	81.47	81.12
CDX73093	Canola	plastid	81.47	81.12
CDY42418	Canola	plastid	81.25	80.9
CDX96548	Canola	plastid	81.03	80.69
Bra015908.1-P	Field mustard	plastid	80.82	80.47
AT1G74470.1	Thale cress	plastid	80.82	80.3
EES07263	Sorghum	plastid	74.78	75.93
Zm00001d018034_P001	Maize	plastid	74.35	75.49
HORVU6Hr1G075900.1	Barley	plastid	75.0	75.32
TraesCS6A01G307700.1	Wheat	plastid	75.0	75.32
TraesCS6B01G336300.1	Wheat	plastid	75.0	75.32
TraesCS6D01G286900.1	Wheat	plastid	75.0	75.32
Os02t0744900-01	Rice	plastid	74.78	74.95
GSMUA_Achr8P24130_001	Banana	plastid	73.28	74.73
Solyc01g088310.2.1	Tomato	plastid	61.21	62.97

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	InterPro:BchP_ChlP_pln/prok	ncoils:Coil	InterPro:FAD/NAD-bd_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016020	GO:GO:0016628
GO:GO:0045550	GO:GO:0050660	GO:GO:0051188	GO:GO:0055114	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn
InterPro:IPR036188	UniProt:K4BLA0	InterPro:MnmG-rel	PFAM:PF01134	PRINTS:PR00420	PANTHER:PTHR42685
PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	EnsemblPlantsGene:Solyc03g115980.1	EnsemblPlants:Solyc03g115980.1.1	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028
TIGRFAMs:TIGR02032	UniParc:UPI0002768D24	SEG:seg	:	:	:

Description

Geranylgeranyl diphosphate reductase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G74470) UniProtKB/Swiss-Prot;Acc:Q9CA67]

Coordinates

chr3:+:65535961..65537355

Molecular Weight (calculated)

51337.9 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.325

Length

464 amino acids

Sequence
(BLAST)

001: MASIALKTFI GLRQSSPENN SIKISKSLPT NHTHRRLRIN ASKSSPRVTG RNLRVAVIGG GPAGGAAAET LAKGGIETFL IERKMDNCKP CGGAIPLCMV
101: GEFDLPLDII DRKVTKMKMI SPSNVAVDIG QTLKPHEYIG MVRREVLDAY LRDRAAEAGA SVLNGLFLRM DMPKAPNSPY VLHYTSYDSK TNGAGEKCTL
201: EVDAVIGADG ANSRVAKSIN AGDYEYAIAF QERIRISDDK MKYYENLAEM YVGDDVSPDF YGWVFPKCDH VAVGTGTVTH KADIKKFQLA TRLRADSKIT
301: GGKIIRVEAH PIPEHPRPRR LQDRVALVGD AAGYVTKCSG EGIYFAAKSG RMCAEAIVEG SENGKRMVDE SDLRKYLEKW DKTYWPTYKV LDILQKVFYR
401: SNPAREAFVE MCADEYVQKM TFDSYLYKKV APGNPIEDLK LAVNTIGSLV RANALRREMD KLSV

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.