Factsheet for HORVU6Hr1G075900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16758444

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G044680.1
HORVU2Hr1G006120.3
HORVU2Hr1G020490.1
HORVU2Hr1G119050.2
HORVU2Hr1G119090.2
HORVU3Hr1G039930.2
HORVU4Hr1G019530.1
HORVU4Hr1G073090.1
HORVU5Hr1G032550.3
HORVU5Hr1G104070.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	HORVU1Hr1G044680.1	AT1G03630.1	22212719
AT1G74470.1	HORVU2Hr1G006120.3	AT1G03630.1	22212719
AT1G74470.1	HORVU2Hr1G020490.1	AT1G03630.1	22212719
AT1G74470.1	HORVU2Hr1G119050.2	AT1G03630.1	22212719
AT1G74470.1	HORVU2Hr1G119090.2	AT1G03630.1	22212719
AT1G74470.1	HORVU4Hr1G073090.1	AT1G03630.1	22212719
AT1G74470.1	HORVU5Hr1G104070.1	AT1G03630.1	22212719
AT1G74470.1	HORVU4Hr1G019530.1	AT1G35670.1	19130088
AT1G74470.1	HORVU5Hr1G032550.3	AT1G35670.1	19130088
AT1G74470.1	HORVU3Hr1G039930.2	AT3G56940.1	22212719
AT1G74470.1	HORVU1Hr1G044680.1	AT4G27440.1	22212719
AT1G74470.1	HORVU2Hr1G006120.3	AT4G27440.1	22212719
AT1G74470.1	HORVU2Hr1G020490.1	AT4G27440.1	22212719
AT1G74470.1	HORVU2Hr1G119050.2	AT4G27440.1	22212719
AT1G74470.1	HORVU2Hr1G119090.2	AT4G27440.1	22212719
AT1G74470.1	HORVU4Hr1G073090.1	AT4G27440.1	22212719
AT1G74470.1	HORVU5Hr1G104070.1	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G286900.1	Wheat	plastid	99.35	99.35
TraesCS6B01G336300.1	Wheat	plastid	99.35	99.35
TraesCS6A01G307700.1	Wheat	plastid	98.92	98.92
Os02t0744900-01	Rice	plastid	89.83	89.63
EES07263	Sorghum	plastid	88.53	89.5
Zm00001d018034_P001	Maize	plastid	88.31	89.28
GSMUA_Achr8P24130_001	Banana	plastid	74.24	75.38
KRH56906	Soybean	plastid	75.32	75.32
PGSC0003DMT400050234	Potato	plastid	75.54	75.22
KRH03484	Soybean	plastid	75.11	75.11
Solyc03g115980.1.1	Tomato	plastid	75.32	75.0
VIT_17s0000g06280.t01	Wine grape	plastid	75.11	74.3
CDY65895	Canola	plastid	71.43	73.66
AT1G74470.1	Thale cress	plastid	73.16	72.38
CDX96548	Canola	plastid	72.94	72.32
CDX73093	Canola	plastid	72.94	72.32
Bra008152.1-P	Field mustard	plastid	72.94	72.32
CDY42418	Canola	plastid	72.73	72.1
Bra015908.1-P	Field mustard	plastid	72.51	71.89

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	EMBL:AK373508	InterPro:BchP_ChlP_pln/prok	UniProt:F2EBI3
InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009941	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995	GO:GO:0016020	GO:GO:0016628
GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn
EnsemblPlantsGene:HORVU6Hr1G075900	EnsemblPlants:HORVU6Hr1G075900.1	InterPro:IPR036188	PFAM:PF01494	PRINTS:PR00420	PANTHER:PTHR42685
PANTHER:PTHR42685:SF3	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI000200856E
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EBI3]

Coordinates

chrchr6H:+:522651685..522654482

Molecular Weight (calculated)

50675.9 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.298

Length

462 amino acids

Sequence
(BLAST)

001: MTSLSSSAAT ARATFLPSSC RARPAGGRRS QLLVTRAATS SPKLPGGRKL RVAVVGGGPA GGAAAEALAK GGVETVLIER KMDNCKPCGG AIPLCMVSEF
101: DLPLDLVDRR VTKMKMISPS NVAVDIGRTL APHEYIGMVR REVLDDFLRT RAQKAGAEVL NGLFLRYEEP KERNGTYTVH YNHYDSSNGK VGGEKRSFEV
201: DAIVGADGAN SRVAKDMGAG DYEYAIAFQE RVKIPDDKMR YYEERAEMYV GDDVSPDFYG WVFPKCDHVA VGTGTVTHKA DIKKFQAATR LRAKDKIEGG
301: KIIRVEAHPI PEHPRPKRVS GRVTLVGDAA GYVTKCSGEG IYFAAKSGRM CAEAIVAGSA NGTRLVDESD LRKYLAEFDR LYWPTYKVLD ILQKVFYRSN
401: AAREAFVEMC ADDYVQRMTF DSYLYKRVVP GNPIEDIKLA VNTIGSLVRA TALRREMGKL TL

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.