CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94008
EES02775
EES09373
EES11656
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74470.1	EER94008	AT1G03630.1	22212719
AT1G74470.1	EES11656	AT1G03630.1	22212719
AT1G74470.1	EES09373	AT1G35670.1	19130088
AT1G74470.1	EES16732	AT1G35670.1	19130088
AT1G74470.1	EES02775	AT3G56940.1	22212719
AT1G74470.1	EER94008	AT4G27440.1	22212719
AT1G74470.1	EES11656	AT4G27440.1	22212719

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018034_P001	Maize	plastid	99.12	99.12
Os02t0744900-01	Rice	plastid	91.03	89.85
TraesCS6D01G286900.1	Wheat	plastid	89.93	88.96
TraesCS6B01G336300.1	Wheat	plastid	89.93	88.96
TraesCS6A01G307700.1	Wheat	plastid	89.93	88.96
HORVU6Hr1G075900.1	Barley	plastid	89.5	88.53
KRH56906	Soybean	plastid	77.68	76.84
GSMUA_Achr8P24130_001	Banana	plastid	76.37	76.7
KRH03484	Soybean	plastid	77.24	76.41
PGSC0003DMT400050234	Potato	plastid	76.15	75.0
Solyc03g115980.1.1	Tomato	plastid	75.93	74.78
VIT_17s0000g06280.t01	Wine grape	plastid	75.71	74.09
CDY65895	Canola	plastid	71.77	73.21
CDX73093	Canola	plastid	73.74	72.32
CDX96548	Canola	plastid	73.52	72.1
AT1G74470.1	Thale cress	plastid	73.52	71.95
CDY42418	Canola	plastid	73.09	71.67
Bra015908.1-P	Field mustard	plastid	73.09	71.67
Bra008152.1-P	Field mustard	plastid	72.87	71.46
EES00532	Sorghum	plastid	55.36	56.85

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	EntrezGene:8075711	InterPro:BchP_ChlP_pln/prok	UniProt:C5XYT6
EnsemblPlants:EES07263	ProteinID:EES07263	ProteinID:EES07263.1	InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016020	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114
GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	PFAM:PF01494	PRINTS:PR00420
PANTHER:PTHR42685	PANTHER:PTHR42685:SF3	EnsemblPlantsGene:SORBI_3004G238500	SUPFAM:SSF51905	unigene:Sbi.11542	TIGRFAMs:TIGR02023
TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI0001A859BD	RefSeq:XP_002454287.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:58635408..58637978

Molecular Weight (calculated)

49947.2 Da

IEP (calculated)

9.160

GRAVY (calculated)

-0.239

Length

457 amino acids

Sequence
(BLAST)

001: MTSLSSAVAL PSSCRACPAG GSRRARMVVT RAAASSPKLP NGRRLRVAVV GGGPAGGAAA EALAKGGVET VLIERKMDNC KPCGGAIPLC MVSEFDLPLD
101: LVDRKVRKMK MISPSNVAVD IGRTLAPHEY IGMVRREVLD AYLRSRAQSA GAEVVNGLFL RYEAPKEPNG SYVVHYNHYD SSNGKIGGEK RSFEVDAIVG
201: ADGANSRVAK DMGAGDYEYA IAFQERVKIP DDKMVYYEER AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKADIKKF QAATRLRAKD KIEGGKIIRV
301: EAHPIPEHPR PKRVSGRVTL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VAGSANGTRM VEESDLRKYL AEFDRLYWPT YKVLDILQKV FYRSNAAREA
401: FVEMCADDYV QKMTFDSYLY KRVVPGNPLD DIKLAVNTIG SLVRATALRR EMEKVTL

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.