Factsheet for GSMUA_Achr6P32200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00532	Sorghum	plastid	67.17	70.34
Zm00001d040356_P001	Maize	mitochondrion, plastid	66.52	69.66
TraesCS3D01G186200.1	Wheat	plastid	66.09	69.37
TraesCS3A01G181400.1	Wheat	plastid	65.67	68.46
TraesCS3B01G211400.1	Wheat	plastid	65.45	68.23
Os01t0265000-00	Rice	plastid	65.24	66.52
KRH73442	Soybean	plastid	61.59	64.06
Solyc01g088310.2.1	Tomato	plastid	60.94	62.97
VIT_06s0009g01740.t01	Wine grape	plastid	60.73	60.73
PGSC0003DMT400017587	Potato	plastid	27.04	55.02
GSMUA_Achr8P24130_001	Banana	plastid	52.58	53.85

Protein Annotations

KEGG:00900+1.3.1.83	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	InterPro:BchP_ChlP_pln/prok	InterPro:FAD/NAD-bd_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979
GO:GO:0015995	GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G32200_001
EnsemblPlants:GSMUA_Achr6P32200_001	EnsemblPlants:GSMUA_Achr6T32200_001	InterPro:Geranylgeranyl_Rdtase_fam	InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	UniProt:M0TC15
PRINTS:PR00420	PANTHER:PTHR42685	PANTHER:PTHR42685:SF5	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028
TIGRFAMs:TIGR02032	UniParc:UPI00029676BA	SEG:seg	:	:	:

Description

Geranylgeranyl diphosphate reductase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G32200_001]

Coordinates

chr6:-:31691517..31692917

Molecular Weight (calculated)

50355.7 Da

IEP (calculated)

9.774

GRAVY (calculated)

-0.098

Length

466 amino acids

Sequence
(BLAST)

001: MAATCHYLLS SPFTSGLPLK TTRTTTTKTR PPPFPKAPII IASSARPLRA AVIGGGPAGA SAAEALALGG IETYLIERAP SGSKPCGGAI PLCMLSEFDL
101: PSSLVDRRVT RMRVLSPSNR AADFGRSLLP HEHIPMLRRE VLDAFLRRRA ADAGARLLPG LFTSIRLPLS DSDPYLVHYT ASPSTPGSLA GTPSALAVDV
201: VIGADGANSR VARSISAGDY TTAIAFQERI RLPPAGMSRY EDLAEMYVGA DVSPDFYAWV FPKCDHVAVG TGTSAAKPDI KRLQAAIRAR AGPKIAGGEV
301: IRVEAHPIPE HPRPRRVVGR AALVGDAAGY VTRCSGEGIY FAAKSGRMCG EAIVRAWKER GVVTEADLKT AYLRKWDEEY RGMFRFLDLL QQVFYGSNAG
401: REALVELCAD EYVQRMTFES YLYKRMARGD WRKDLGLAWR TIGSLVRAGV MGWEVDRLRG IGADSS

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.