Factsheet for Zm00001d040356_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00532	Sorghum	plastid	92.13	92.13
TraesCS3D01G186200.1	Wheat	plastid	83.82	84.01
TraesCS3A01G181400.1	Wheat	plastid	83.15	82.77
TraesCS3B01G211400.1	Wheat	plastid	82.92	82.55
Os01t0265000-00	Rice	plastid	83.82	81.62
GSMUA_Achr6P32200_001	Banana	plastid	69.66	66.52
KRH73442	Soybean	plastid	60.9	60.49
Solyc01g088310.2.1	Tomato	plastid	60.0	59.2
VIT_06s0009g01740.t01	Wine grape	plastid	60.67	57.94
Zm00001d018034_P001	Maize	plastid	55.73	54.27
PGSC0003DMT400017587	Potato	plastid	26.97	52.4

Protein Annotations

KEGG:00900+1.3.1.83	EntrezGene:103649981	Gene3D:3.50.50.60	MapMan:7.12.6.6.3	UniProt:A0A1D6MQC2	InterPro:BchP_ChlP_pln/prok
InterPro:FAD-bd	InterPro:FAD/NAD-bd_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015979	GO:GO:0015995
GO:GO:0016628	GO:GO:0045550	GO:GO:0051188	GO:GO:0055114	GO:GO:0071949	InterPro:Geranylgeranyl_Rdtase_fam
InterPro:Geranylgeranyl_Rdtase_pln/cyn	InterPro:IPR036188	ProteinID:ONM31212.1	PFAM:PF01494	PRINTS:PR00420	PANTHER:PTHR42685
PANTHER:PTHR42685:SF5	SUPFAM:SSF51905	TIGRFAMs:TIGR02023	TIGRFAMs:TIGR02028	TIGRFAMs:TIGR02032	UniParc:UPI0001D16570
EnsemblPlantsGene:Zm00001d040356	EnsemblPlants:Zm00001d040356_P001	EnsemblPlants:Zm00001d040356_T001	SEG:seg	:	:

Description

geranylgeranyl hydrogenase2 geranylgeranyl hydrogenase2

Coordinates

chr3:-:39647289..39648626

Molecular Weight (calculated)

47867.7 Da

IEP (calculated)

9.031

GRAVY (calculated)

-0.028

Length

445 amino acids

Sequence
(BLAST)

001: MAAAACYSPA RIIISCSATT TSSSSSARTL RVAVVGGGPA GASAAEALAS AGARTFLLER SPAGAKPCGG AIPLCMLDEF AIPRDLVDRR VTRMRVLSPS
101: NLAADFSRAL PPGAHIPMLR REVLDSFLRR RAVEAGAELV PGLVTSLSLP AGPADPYLVH YISSSPEGVG AGRSVLEVDA IVGADGANSR VAREVGAGDY
201: TTAIAFQERI RLPDAGMAYY DDLAEMYVGG DVSPDFYGWV FPKCDHVAVG TGTVAAKPEI KRLQSGIRAR AGPKIAGGRV VKVEAHPIPE HPRPRRVVGR
301: VALVGDAAGY VTRCSGEGIY FAAKSGRLCG QAMAEEWART GSVTEAGLRR GYLRRWDDEF LLMFRFLDLL QRVFYGGNAG REALVEMCSD DYVQRRTFES
401: YLYKRMVPGE PWGDLRLLWR TVASMVRCGV IGREVERLRR LELQG

Best Arabidopsis Sequence Match ( AT1G74470.1 )
(BLAST)

001: MATTVTLKSF TGLRQSSTEQ TNFVSHVPSS LSLPQRRTSL RVTAARATPK LSNRKLRVAV IGGGPAGGAA AETLAQGGIE TILIERKMDN CKPCGGAIPL
101: CMVGEFNLPL DIIDRRVTKM KMISPSNIAV DIGRTLKEHE YIGMVRREVL DAYLRERAEK SGATVINGLF LKMDHPENWD SPYTLHYTEY DGKTGATGTK
201: KTMEVDAVIG ADGANSRVAK SIDAGDYDYA IAFQERIRIP DEKMTYYEDL AEMYVGDDVS PDFYGWVFPK CDHVAVGTGT VTHKGDIKKF QLATRNRAKD
301: KILGGKIIRV EAHPIPEHPR PRRLSKRVAL VGDAAGYVTK CSGEGIYFAA KSGRMCAEAI VEGSQNGKKM IDEGDLRKYL EKWDKTYLPT YRVLDVLQKV
401: FYRSNPAREA FVEMCNDEYV QKMTFDSYLY KRVAPGSPLE DIKLAVNTIG SLVRANALRR EIEKLSV

Arabidopsis Description

CHLPGeranylgeranyl diphosphate reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.