Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08324 | Canola | cytosol | 73.15 | 78.22 |
| CDY25531 | Canola | mitochondrion | 81.02 | 69.44 |
| CDY34380 | Canola | mitochondrion | 81.02 | 69.44 |
| Bra027662.1-P | Field mustard | mitochondrion | 80.56 | 69.05 |
| Bra027784.1-P | Field mustard | mitochondrion, plastid | 79.63 | 68.25 |
| CDY38220 | Canola | plastid | 79.63 | 68.25 |
| AT1G64680.1 | Thale cress | mitochondrion, plastid | 78.7 | 68.0 |
| VIT_02s0025g02640.t01 | Wine grape | plastid | 81.48 | 66.17 |
| KRH17565 | Soybean | mitochondrion, plastid | 81.02 | 65.79 |
| KRH70396 | Soybean | plastid | 80.56 | 64.44 |
| Solyc08g008630.2.1 | Tomato | plastid | 79.17 | 63.81 |
| PGSC0003DMT400015016 | Potato | plastid | 79.63 | 63.7 |
| TraesCSU01G097100.1 | Wheat | plastid | 76.85 | 63.6 |
| Os08t0114100-01 | Rice | plastid | 76.39 | 63.22 |
| KXG24264 | Sorghum | plastid | 78.24 | 62.83 |
| TraesCS7A01G317900.1 | Wheat | plastid | 76.39 | 62.5 |
| Zm00001d045816_P001 | Maize | mitochondrion | 37.5 | 62.31 |
| TraesCS7D01G314600.1 | Wheat | plastid | 75.93 | 62.12 |
| HORVU7Hr1G076030.6 | Barley | plastid | 75.46 | 55.44 |
| Zm00001d035081_P001 | Maize | plastid | 74.54 | 52.79 |
| GSMUA_Achr1P14050_001 | Banana | mitochondrion | 36.11 | 31.97 |
| GSMUA_Achr2P08930_001 | Banana | mitochondrion, plastid | 37.04 | 28.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P12260_001 | EnsemblPlants:GSMUA_Achr3T12260_001 | EnsemblPlantsGene:GSMUA_Achr3G12260_001 | InterPro:D27-like | InterPro:DUF4033 | KEGG:00906+5.2.1.14 |
| PANTHER:PTHR33591 | PANTHER:PTHR33591:SF1 | PFAM:PF13225 | UniParc:UPI0002950BC7 | UniProt:M0SDZ3 | MapMan:35.1 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G12260_001]
Coordinates
chr3:-:9082034..9084267
Molecular Weight (calculated)
24612.9 Da
IEP (calculated)
7.960
GRAVY (calculated)
-0.264
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQKTQYKDG LFEKLFMSLF ARKMEKFATS EVSKKNNALW DMDYERFVDV SKRVMIGRSR KQQQEVVREV LLSMLPPGAP AQFRKLFPPT RWAAEFNAAL
101: TVPFFHWLVG PSEVIEVEVN GVKQRSGVQI KKCRYLENSG CVGMCVNMCK LPTQDFFTNE FGLPLTMNPN FEDMSCEMVY GQVPPLFEED AVSKQPCYAD
201: MCSVANTSSP VCPKLQ
101: TVPFFHWLVG PSEVIEVEVN GVKQRSGVQI KKCRYLENSG CVGMCVNMCK LPTQDFFTNE FGLPLTMNPN FEDMSCEMVY GQVPPLFEED AVSKQPCYAD
201: MCSVANTSSP VCPKLQ
001: MAAIASLQAV NLTFRRRSTR CGIAEPSGEP APMGLKTRYE DGLVERVFMG LFARKMDKFG SKKKKDTKEK GFWEYDYESF VEVSKRVMQG RSRVQQQEAV
101: REVLLSMLPP GAPEQFRKLF PPTKWAAEFN AALTVPFFHW LVGPSQVIEV EVNGVKQRSG VRIKKCRYLE NSGCVGMCVN MCKIPTQDFF TNEFGLPLTM
201: NPNYEDMSCE MIYGQAPPAF EEDVATKQPC LADICSMSNP SSPICPKLEA
101: REVLLSMLPP GAPEQFRKLF PPTKWAAEFN AALTVPFFHW LVGPSQVIEV EVNGVKQRSG VRIKKCRYLE NSGCVGMCVN MCKIPTQDFF TNEFGLPLTM
201: NPNYEDMSCE MIYGQAPPAF EEDVATKQPC LADICSMSNP SSPICPKLEA
Arabidopsis Description
At1g64680 [Source:UniProtKB/TrEMBL;Acc:Q9SGU7]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.