Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38220 | Canola | plastid | 94.06 | 75.4 |
| CDY25531 | Canola | mitochondrion | 91.58 | 73.41 |
| GSMUA_Achr3P12260_001 | Banana | cytosol | 78.22 | 73.15 |
| CDY34380 | Canola | mitochondrion | 90.59 | 72.62 |
| AT1G64680.1 | Thale cress | mitochondrion, plastid | 88.61 | 71.6 |
| Zm00001d045816_P001 | Maize | mitochondrion | 40.1 | 62.31 |
| Os08t0114100-01 | Rice | plastid | 76.24 | 59.0 |
| KRH17565 | Soybean | mitochondrion, plastid | 77.23 | 58.65 |
| Solyc08g008630.2.1 | Tomato | plastid | 77.23 | 58.21 |
| PGSC0003DMT400015016 | Potato | plastid | 77.72 | 58.15 |
| VIT_02s0025g02640.t01 | Wine grape | plastid | 75.25 | 57.14 |
| TraesCSU01G097100.1 | Wheat | plastid | 73.76 | 57.09 |
| KRH70396 | Soybean | plastid | 76.24 | 57.04 |
| KXG24264 | Sorghum | plastid | 75.25 | 56.51 |
| TraesCS7A01G317900.1 | Wheat | plastid | 73.76 | 56.44 |
| TraesCS7D01G314600.1 | Wheat | plastid | 73.76 | 56.44 |
| HORVU7Hr1G076030.6 | Barley | plastid | 72.28 | 49.66 |
| Zm00001d035081_P001 | Maize | plastid | 70.79 | 46.89 |
| CDY32495 | Canola | mitochondrion, plastid | 38.12 | 29.17 |
| CDY37443 | Canola | mitochondrion | 38.12 | 28.95 |
| CDX91821 | Canola | plastid | 32.67 | 25.48 |
| CDX90961 | Canola | plastid | 32.18 | 25.39 |
Protein Annotations
| EnsemblPlants:CDY08324 | EnsemblPlantsGene:GSBRNA2T00000017001 | InterPro:D27-like | InterPro:DUF4033 | KEGG:00906+5.2.1.14 | MetaCyc:PWY-7101 |
| PANTHER:PTHR33591 | PANTHER:PTHR33591:SF1 | PFAM:PF13225 | ProteinID:CDY08324 | ProteinID:CDY08324.1 | SEG:seg |
| UniParc:UPI0004EDEC0A | UniProt:A0A078F5J0 | MapMan:35.1 | : | : | : |
Description
BnaC09g12720DBnaC09g12720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5J0]
Coordinates
chrLK031985:+:140850..141827
Molecular Weight (calculated)
22881.6 Da
IEP (calculated)
7.628
GRAVY (calculated)
-0.351
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTTSKMEKF GGSKKKNEMK EKGFWDYDYE SFVEVSKRVM QGRSRTQQQE VVREVLLSML PPGAPEQFRK LFPPTKWAAE FNAALTVPFF HWLVGPSQVI
101: EVEVNGVKQI SGVRIKKCRY LENSGCVGMC VNMCKIPTQD FFTNEFGLPL TMNPNFDDMS CEMIYSQAPP AFEDDPATKQ PCLAYICSVS NPSSPVCPKL
201: QA
101: EVEVNGVKQI SGVRIKKCRY LENSGCVGMC VNMCKIPTQD FFTNEFGLPL TMNPNFDDMS CEMIYSQAPP AFEDDPATKQ PCLAYICSVS NPSSPVCPKL
201: QA
001: MAAIASLQAV NLTFRRRSTR CGIAEPSGEP APMGLKTRYE DGLVERVFMG LFARKMDKFG SKKKKDTKEK GFWEYDYESF VEVSKRVMQG RSRVQQQEAV
101: REVLLSMLPP GAPEQFRKLF PPTKWAAEFN AALTVPFFHW LVGPSQVIEV EVNGVKQRSG VRIKKCRYLE NSGCVGMCVN MCKIPTQDFF TNEFGLPLTM
201: NPNYEDMSCE MIYGQAPPAF EEDVATKQPC LADICSMSNP SSPICPKLEA
101: REVLLSMLPP GAPEQFRKLF PPTKWAAEFN AALTVPFFHW LVGPSQVIEV EVNGVKQRSG VRIKKCRYLE NSGCVGMCVN MCKIPTQDFF TNEFGLPLTM
201: NPNYEDMSCE MIYGQAPPAF EEDVATKQPC LADICSMSNP SSPICPKLEA
Arabidopsis Description
At1g64680 [Source:UniProtKB/TrEMBL;Acc:Q9SGU7]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.