Factsheet for Zm00001d035081_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0114100-01	Rice	plastid	66.89	78.16
GSMUA_Achr3P12260_001	Banana	cytosol	52.79	74.54
CDY08324	Canola	cytosol	46.89	70.79
Zm00001d045816_P001	Maize	mitochondrion	29.84	70.0
AT1G64680.1	Thale cress	mitochondrion, plastid	55.74	68.0
Bra027662.1-P	Field mustard	mitochondrion	55.41	67.06
CDY25531	Canola	mitochondrion	55.08	66.67
CDY38220	Canola	plastid	54.75	66.27
CDY34380	Canola	mitochondrion	54.75	66.27
Bra027784.1-P	Field mustard	mitochondrion, plastid	54.43	65.87
KRH17565	Soybean	mitochondrion, plastid	55.74	63.91
KRH70396	Soybean	plastid	56.07	63.33
VIT_02s0025g02640.t01	Wine grape	plastid	54.43	62.41
PGSC0003DMT400015016	Potato	plastid	54.1	61.11
Solyc08g008630.2.1	Tomato	plastid	53.11	60.45
Zm00001d007549_P003	Maize	plastid	28.52	31.87
Zm00001d007560_P004	Maize	plastid	28.2	31.27
Zm00001d024718_P004	Maize	plastid	24.26	26.71

Protein Annotations

EnsemblPlants:Zm00001d035081_P001	EnsemblPlants:Zm00001d035081_T001	EnsemblPlantsGene:Zm00001d035081	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853
InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14	PANTHER:PTHR33591	PANTHER:PTHR33591:SF1	PFAM:PF13225
ProteinID:AQK78297.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002212EBE	UniProt:A0A1D6LEA4	MapMan:35.1

Description

Beta-carotene isomerase D27 chloroplastic

Coordinates

chr6:-:4037971..4039290

Molecular Weight (calculated)

33689.0 Da

IEP (calculated)

9.523

GRAVY (calculated)

-0.264

Length

305 amino acids

Sequence
(BLAST)

001: MARTARYPNR PRIAVAAVPP AAAEALSLFL SSFAPLPRPT MELCLAARAG TTAAACRRRA PTTTGVPKKK RHGGGTVRVR CAATAPMGEK TEYRDGPLER
101: AFMGLFARKM EKYAAKKPAA QAKEERAVWE WDYESFVDVS RRVMLGRTRA QQQQAVREVL LSMLPPGAPA QFRRLFPPTR WACEFNAALT VPFFRWLVGP
201: SEVVEVEVGG VRQRSGVRIE KCRYLESSGC VGMCVNMCKV PTQDFFTNEF GLPLTMNPNF EDMSCEMIYG QVPPPLEEDP ASKQACYPSL CSMSTPSAPA
301: CPKLQ

Best Arabidopsis Sequence Match ( AT1G64680.1 )
(BLAST)

001: MAAIASLQAV NLTFRRRSTR CGIAEPSGEP APMGLKTRYE DGLVERVFMG LFARKMDKFG SKKKKDTKEK GFWEYDYESF VEVSKRVMQG RSRVQQQEAV
101: REVLLSMLPP GAPEQFRKLF PPTKWAAEFN AALTVPFFHW LVGPSQVIEV EVNGVKQRSG VRIKKCRYLE NSGCVGMCVN MCKIPTQDFF TNEFGLPLTM
201: NPNYEDMSCE MIYGQAPPAF EEDVATKQPC LADICSMSNP SSPICPKLEA

Arabidopsis Description

At1g64680 [Source:UniProtKB/TrEMBL;Acc:Q9SGU7]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.