Factsheet for Zm00001d007549_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007560_P004	Maize	plastid	97.44	96.73
Os11t0587000-01	Rice	plastid	69.96	68.7
KXG28800	Sorghum	plastid	72.16	67.47
TraesCS7B01G319100.1	Wheat	plastid	64.1	62.72
TraesCS7A01G418900.1	Wheat	plastid	63.0	61.87
TraesCS7D01G411500.1	Wheat	plastid	63.37	61.79
HORVU7Hr1G096970.10	Barley	plastid	60.81	60.14
GSMUA_Achr1P14050_001	Banana	mitochondrion	49.45	55.33
VIT_00s0179g00330.t01	Wine grape	mitochondrion, plastid	47.62	52.63
KRH71353	Soybean	cytosol	47.62	52.21
KRH32085	Soybean	mitochondrion, plastid	47.62	50.78
GSMUA_Achr2P08930_001	Banana	mitochondrion, plastid	51.28	50.18
PGSC0003DMT400049687	Potato	extracellular	20.88	47.11
AT1G03055.1	Thale cress	plastid	38.83	40.15
Solyc09g065750.2.1	Tomato	cytosol	42.86	40.07
Bra032560.1-P	Field mustard	mitochondrion, plastid	38.46	39.47
CDY37443	Canola	mitochondrion	38.46	39.47
CDY32495	Canola	mitochondrion, plastid	38.1	39.39
Zm00001d045816_P001	Maize	mitochondrion	16.48	34.62
Zm00001d035081_P001	Maize	plastid	31.87	28.52
Zm00001d024718_P004	Maize	plastid	25.64	25.27

Protein Annotations

EnsemblPlants:Zm00001d007549_P003	EnsemblPlants:Zm00001d007549_T003	EnsemblPlantsGene:Zm00001d007549	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853
InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14	PANTHER:PTHR33591	PANTHER:PTHR33591:SF3	PFAM:PF13225
ProteinID:ONM27081.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0008435AF6	UniProt:A0A1D6F764	MapMan:11.9.1.1

Description

Beta-carotene isomerase D27 chloroplastic

Coordinates

chr2:+:234537768..234541479

Molecular Weight (calculated)

30391.8 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.070

Length

273 amino acids

Sequence
(BLAST)

001: MEVAAATCTL LAAVALPVSS SAAAARSATK QSYSRRKTTA VRAVMARPHQ VPPPATATAT TYRDNWFDKL AIGYLSRNLQ EASGMKNRKD GYEGLIEAAL
101: AISALFRVDQ QWDTVASALQ RAFPSYILTM IKVMMPPSRF SREYFAAFTT VFFPWLVGPC EVVRVIIVSP NICKVRESQV DGREERNVVY IPKCRFLEST
201: NCVGMCTNLC KIPCQRFIQD SLGTAVYMSP NFEDMSCEMI FGQQPPEDDP ALKQPCFRTK CIAKQNHQVN CSI

Best Arabidopsis Sequence Match ( AT1G03055.1 )
(BLAST)

001: MNTKLSLSQT KIFTFTTWFN DTRSGLDRRS SISPTLCSKP VYSGKLKAAK ETARIETSNT KNASIEDSFF SKIAINYLSK NLQDAAGISS SSKSTDYDRL
101: VDTATRVSRN FDTKQQHEFV LSSLDRALPT VISSLIKMAF PPSKVSRELF ALFTTISFAW LVGPSEVRET EVNGRKEKSV VYIEKCRFLE QSNCVGMCTH
201: ICKIPSQIFI KNSLGMPIYM EPDFNDLSCK MMFGREPPEI EDDPAMKQPC FEFCKSNKSY GVKH

Arabidopsis Description

D27Beta-carotene isomerase D27, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XA78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.