CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32495	Canola	mitochondrion, plastid	95.11	95.83
Bra032560.1-P	Field mustard	mitochondrion, plastid	80.45	80.45
AT1G03055.1	Thale cress	plastid	74.44	75.0
PGSC0003DMT400049687	Potato	extracellular	21.8	47.93
VIT_00s0179g00330.t01	Wine grape	mitochondrion, plastid	42.86	46.15
KRH71353	Soybean	cytosol	42.86	45.78
KRH32085	Soybean	mitochondrion, plastid	43.23	44.92
GSMUA_Achr1P14050_001	Banana	mitochondrion	39.1	42.62
Os11t0587000-01	Rice	plastid	42.48	40.65
GSMUA_Achr2P08930_001	Banana	mitochondrion, plastid	41.73	39.78
Zm00001d007549_P003	Maize	plastid	39.47	38.46
Zm00001d007560_P004	Maize	plastid	39.47	38.18
TraesCS7A01G418900.1	Wheat	plastid	39.85	38.13
CDY08324	Canola	cytosol	28.95	38.12
TraesCS7B01G319100.1	Wheat	plastid	39.85	37.99
TraesCS7D01G411500.1	Wheat	plastid	39.1	37.14
Solyc09g065750.2.1	Tomato	cytosol	40.6	36.99
KXG28800	Sorghum	plastid	40.23	36.64
HORVU7Hr1G096970.10	Barley	plastid	37.97	36.59
CDY25531	Canola	mitochondrion	31.58	33.33
CDY38220	Canola	plastid	31.58	33.33
CDY34380	Canola	mitochondrion	31.58	33.33
CDX90961	Canola	plastid	25.56	26.56
CDX91821	Canola	plastid	25.56	26.25

Protein Annotations

EnsemblPlants:CDY37443	EnsemblPlantsGene:GSBRNA2T00064022001	InterPro:D27-like	InterPro:DUF4033	KEGG:00906+5.2.1.14	MetaCyc:PWY-7101
PANTHER:PTHR33591	PANTHER:PTHR33591:SF3	PFAM:PF13225	ProteinID:CDY37443	ProteinID:CDY37443.1	SEG:seg
UniParc:UPI0004EC8647	UniProt:A0A078HKP9	MapMan:11.9.1.1	:	:	:

Description

BnaC08g45810DBnaC08g45810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKP9]

Coordinates

chrLK032400:+:125398..127247

Molecular Weight (calculated)

29755.4 Da

IEP (calculated)

9.917

GRAVY (calculated)

-0.190

Length

266 amino acids

Sequence
(BLAST)

001: MMNTKLSLSK TKIIGFTIRL NDTRTRYGRS TISATLSSKP AYSGELKVVK ETSGTEPLKK KNASNEDNFL SKIAINYLSK TLRDTAGISS SSSSKSTGYD
101: SLVDTATRVA GNLSIKQQHE LVLVALDRAF PAVILSLIKM LLPPSKLSRE MFALFTTVFF AWLVGPSEVR ETEVNGRKEK SLVFIEKCRF LEQTNCVGMC
201: THLCKIPSQI FIKNSLGMPI YMMPDFNDLS CKMMFGQEPP EIKDDPVMKQ PCFQFCKSNR SYGVKH

Best Arabidopsis Sequence Match ( AT1G03055.1 )
(BLAST)

001: MNTKLSLSQT KIFTFTTWFN DTRSGLDRRS SISPTLCSKP VYSGKLKAAK ETARIETSNT KNASIEDSFF SKIAINYLSK NLQDAAGISS SSKSTDYDRL
101: VDTATRVSRN FDTKQQHEFV LSSLDRALPT VISSLIKMAF PPSKVSRELF ALFTTISFAW LVGPSEVRET EVNGRKEKSV VYIEKCRFLE QSNCVGMCTH
201: ICKIPSQIFI KNSLGMPIYM EPDFNDLSCK MMFGREPPEI EDDPAMKQPC FEFCKSNKSY GVKH

Arabidopsis Description

D27Beta-carotene isomerase D27, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q7XA78]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.